Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00734 ATGGCAGCTAGGTATGATCTCATCAAGTGTATCAATGCTGGTCCAGCGCATAAGGTGTGGAAGCTCAAAGTACGTGTCATTAGACTTTGGACCGTTTCTCAATTTGCAAGATCTGGGATGAAGGCACCTATTGAGATGGTTGTCCTTGATGAAGAGGGAGATACAATTCAATGCACTGTAAAAGACATATTTGTTCCTATCTTCGAGGGCTTACTCGCTGAGGGCAACGTGTACGTGGTCACTAATTTTGGAGTTGCTTTGAATACCATCAAGTTCAAGCCTACTAGACACGAATTTAGGATCCATTTCAAGAGGGACACGATTGTGCGTCCGGTACAAGATTCTTCAGTTCCATTGAACGGATTTAATTTTGTTCCGTTCAAAACAATTCAATCAGAGTCTAAAGAAGATGGTTATTTAGTTGATGTGATAGGTCAGCTTGCTTCTAAGGGTAACTTGGTCGAATTCACACGGGATGGGAAGCCGTCAAGTTATATCACCATAGAACTTGATGATCTTGAGGGTGGACAGAAATTAAGGGTAACGTTGTGGCAGTCTTTTGCTTTTGAATTGCTCAAATATCTAGAGGAACACCCGTGTCTTACCTATGTGGTTATTCTCCAAATGGGCAAGATGAAATTTTATAGTGGGGTCATGGGTGTATCTAACACAAACTACAATTCAAAACTGTTTATCAATGTTGAGTTTCCAGCTGCCAGGGATTTCTTTGCGAGGGTGAACAAATTGGATCCTGTTGACGGACAAGGCATAATGCCGCTGGTCTGTGGTCAACCTGTTTCAGATGAGGAGGATTTTTTGCGTCTGTCAGTCTACAAAACAATTGCAGAGATAAAGGAGCATAATCAGGATACTGTATTTGTTACAGCCGGGACGATTAAAGAAGTTGAGACTGAATTTGGTTGGAGGTACAAAGGATGTAAGAAGTGTCGTCGTGGCTTGAAAGAACTTGATAAAAAATATTTCTGTCCCAATTGCATTAGAGACTACGGGTTCTATGAGCCAAGGTACATCATCCACATAAGGGTGATAGACCACACCGATGCTGGCTCTTTTGTTTTGTTCGATGGAGAAGCTGCAAAGTTTCTTGGAGTTTCTGCTAAGGACCTTAGGCAGTCTTGTGTGACTAAGGGTGTTGAGAAAAATTCCTGTCCCGAAGAGATTAATAAGCTTAGGGATATTAAGTTCATCTTCAAAGTGCAACTCAAGATGAGGAATCTGAACTCTTATGAACCATATGTGATTCATGTGCTGAGAATGACTAATGAGAATTCTTTGGTCTCTGCCTTCCTGGATAAATACAATTCCGACACTGGCCTTTTGTCCCATGAAAATTCTGAACTATTGAGTTTGTCTACTGGTCCATACAACACTTCTAAGGCTTGTGAGAGTGAGCCAACTCCATCTCCTGCAGTTGATGAGAAACATAATTCTAAGATTCTCGGAGCTAAGAAACATATTGAAGAGATTGGAGAGGAGTCAGTTTCATCCAAATCTAAGAAAGGGAAGTGGGTTGTGGGGGAGGACTAA 1548 0.4147 MAARYDLIKCINAGPAHKVWKLKVRVIRLWTVSQFARSGMKAPIEMVVLDEEGDTIQCTVKDIFVPIFEGLLAEGNVYVVTNFGVALNTIKFKPTRHEFRIHFKRDTIVRPVQDSSVPLNGFNFVPFKTIQSESKEDGYLVDVIGQLASKGNLVEFTRDGKPSSYITIELDDLEGGQKLRVTLWQSFAFELLKYLEEHPCLTYVVILQMGKMKFYSGVMGVSNTNYNSKLFINVEFPAARDFFARVNKLDPVDGQGIMPLVCGQPVSDEEDFLRLSVYKTIAEIKEHNQDTVFVTAGTIKEVETEFGWRYKGCKKCRRGLKELDKKYFCPNCIRDYGFYEPRYIIHIRVIDHTDAGSFVLFDGEAAKFLGVSAKDLRQSCVTKGVEKNSCPEEINKLRDIKFIFKVQLKMRNLNSYEPYVIHVLRMTNENSLVSAFLDKYNSDTGLLSHENSELLSLSTGPYNTSKACESEPTPSPAVDEKHNSKILGAKKHIEEIGEESVSSKSKKGKWVVGED 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00734 515 SUPERFAMILY Nucleic acid-binding proteins 15 114 IPR012340 -
Aip09g00734 515 CDD RPA1_DBD_B_like 142 242 - -
Aip09g00734 515 Gene3D - 116 250 IPR012340 -
Aip09g00734 515 MobiDBLite consensus disorder prediction 465 484 - -
Aip09g00734 515 Gene3D - 8 115 IPR012340 -
Aip09g00734 515 PANTHER BNAC07G49340D PROTEIN 32 439 - -
Aip09g00734 515 SUPERFAMILY Nucleic acid-binding proteins 122 246 IPR012340 -
Aip09g00734 515 CDD RPA1_DBD_C 281 414 IPR013955 -
Aip09g00734 515 CDD RPA1_DBD_A_like 21 109 - -
Aip09g00734 515 Pfam Replication factor-A C terminal domain 293 416 IPR013955 -
Aip09g00734 515 SUPERFAMILY Nucleic acid-binding proteins 278 428 IPR012340 -
Aip09g00734 515 Pfam Domain of unknown function DUF223 45 135 IPR003871 -
Aip09g00734 515 Gene3D - 270 439 IPR012340 -
Aip09g00734 515 PANTHER REPLICATION FACTOR A 1, RFA1 32 439 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00734 Aip-Chr9 9181104 9184933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00734 2 423 Core DNA Replication Machinery Family AT5G08020 23.529 1.42e-18 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00734 - - adu:107477146 996.497