Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00718 ATGAAAGACAGAGACAGTGGAGAAGGTAAGGGGTATGCTTTTGTGGCTTTCAAAACAAAAGAGGTTGCACAAAACGCCATAGAAGAGATACACAATAAGAAATATAAGGTTAAAGCTCTTTATGTGAAGAACATACTTGAGAATACTACTACCAAACAATTCAAGGAACTATTCTCTCGTCATGGAGAAGTAACAAAAGTAGTCATGCCACCTAGCAAAGCCGGAGGGAAGCGTGATTTTGGTTTCATCCATTATGCAGAGAGGTCAAGTGCATTAAAGGCCGTAAAAGACTCGGAGAAATACGAAATTGATGGTCAATTGCTCGAGGTTGTTCTTGTCAAACCTCAAGCTGAGAAAAAACCCAATATGGGTTACGACTACAATCCTGGACTTGCACATCTTGAGTTTGGTGGTGCCTTTGCTGGAAATCTGCATGGCTCGGTAATAGGTGTTGCAGGAGCTGGATATGGTGTTGCTCCTAGCTGGATGGTTCTGATGGCATTGCCAAATGGCAAAATCGGCTATGTCTTAGAACAGGGAGATGGGGTTGCTTTCTACTCTATTACCACATGA 573 0.4241 MKDRDSGEGKGYAFVAFKTKEVAQNAIEEIHNKKYKVKALYVKNILENTTTKQFKELFSRHGEVTKVVMPPSKAGGKRDFGFIHYAERSSALKAVKDSEKYEIDGQLLEVVLVKPQAEKKPNMGYDYNPGLAHLEFGGAFAGNLHGSVIGVAGAGYGVAPSWMVLMALPNGKIGYVLEQGDGVAFYSITT 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00718 190 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 1 38 - -
Aip09g00718 190 SMART rrm1_1 39 111 IPR000504 GO:0003723
Aip09g00718 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 107 IPR000504 GO:0003723
Aip09g00718 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 39 IPR000504 GO:0003723
Aip09g00718 190 SUPERFAMILY RNA-binding domain, RBD 37 127 IPR035979 GO:0003676
Aip09g00718 190 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 36 180 - -
Aip09g00718 190 SUPERFAMILY RNA-binding domain, RBD 1 35 IPR035979 GO:0003676
Aip09g00718 190 Gene3D - 1 37 IPR012677 -
Aip09g00718 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 115 IPR000504 GO:0003723
Aip09g00718 190 PANTHER GEO13361P1-RELATED 1 38 - -
Aip09g00718 190 PANTHER GEO13361P1-RELATED 36 180 - -
Aip09g00718 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 47 IPR000504 GO:0003723
Aip09g00718 190 Gene3D - 38 133 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00718 Aip-Chr9 8739626 8741301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00718 7 96 Eukaryotic Initiation Factors Gene Family AT2G23350 30.088 4.65e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00718 K13161 - gmx:100800974 194.126