Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00687 ATGACGGCAAAGGCCAGTGAATACGAGGAGATTCGGCGGAAGAGGTTGGAGGAGAACAAGAAGAGGATGGAGGCCCTCAATCTCCCCAACCTCTCTCAGGCCCTCCACACCTCTCCTCTTTCCAAATCCAAATCACACTCTCCCTCTCCGCTGAAGCGCGTCAAGTCACGCACCATTGAGAAGCAGGTGGTTGTGGTGAGGAGGTCCAGCCGCGTCGCCAACATGCCAGCTCCTGTTTACAAAGAAGTGGTTATTGATCGTGTTGTCACACCTAGAAGCCGCAGATATGGCGGCTCCTACGATCGCTACAGGGATTATTCAAAGCGGGTGTATGCTTCCGATGAAGCCAGACAGGAAGCCCTAGACAAGGCCGATAAGATACAATCGGATTTGCAGTCTAAGTCTCATCATCCATCCTTCGTTAAAACCATGCTCCAGTCTCACGTCACCGGCGGATTCTGGCTGGGTCTTTCAGTCCAGTTCTGTAAGACGCATCTTCCAAATCGTGACGAAAGAATTACTTTGATTGATGAGGATGGGGATGAGTATGAAACACTATATTTGGCTCGAAAAACAGGACTTAGTGCAGGATGGAGAGGCTTTTCAATTGCTCATAACCTAGTTGATGGGGACGCTTTAGTTTTTGAACTAATTAGCCGCACTACATTCAAGGTTTACATTGTTAGAGTGAATAGTCCTGCAGAGGGTGAAGAGCAATGA 720 0.4875 MTAKASEYEEIRRKRLEENKKRMEALNLPNLSQALHTSPLSKSKSHSPSPLKRVKSRTIEKQVVVVRRSSRVANMPAPVYKEVVIDRVVTPRSRRYGGSYDRYRDYSKRVYASDEARQEALDKADKIQSDLQSKSHHPSFVKTMLQSHVTGGFWLGLSVQFCKTHLPNRDERITLIDEDGDEYETLYLARKTGLSAGWRGFSIAHNLVDGDALVFELISRTTFKVYIVRVNSPAEGEEQ 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00687 239 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS03G0184500 3 235 - -
Aip09g00687 239 MobiDBLite consensus disorder prediction 18 55 - -
Aip09g00687 239 SMART B3_2 140 231 IPR003340 GO:0003677
Aip09g00687 239 SUPERFAMILY DNA-binding pseudobarrel domain 133 231 IPR015300 -
Aip09g00687 239 MobiDBLite consensus disorder prediction 30 47 - -
Aip09g00687 239 Pfam B3 DNA binding domain 140 229 IPR003340 GO:0003677
Aip09g00687 239 Coils Coil 6 26 - -
Aip09g00687 239 ProSiteProfiles B3 DNA-binding domain profile. 140 231 IPR003340 GO:0003677
Aip09g00687 239 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 3 235 IPR044837 -
Aip09g00687 239 Gene3D - 112 232 IPR015300 -
Aip09g00687 239 CDD B3_DNA 138 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00687 Aip-Chr9 8353644 8355259 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00687 8 237 B3 DNA Binding Superfamily AT3G19184 53.913 2.52e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip09g00687 B3 3.1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00687 - - gmx:100794327 299.286