Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00679 ATGAGCATGATGAAGAGTTTGATATTCCAACAACAACAAAATCAGCAGCAGCAACAAGTGGTGGTAGTGGAAGAAAACATGTCTAATTTGACTTCAGCTTCAAACGAAGGTAATAACAGTGTTTCCTCAGGTACAAGAACTGAAATTGGAACCTTCATGACTCCACCACCAACATCATCTGACACTTCTACACAGCCACCATCAAAGAAAAAGAGAAACCTTCCCGGCAACCCAGACCCAGATGCTGAGGTAATAGCTTTATCTCCAAAATCTCTCTTAGCAACAAACAGATTCATGTGTGAGATCTGCAACAAAGGGTTCCAGAGAGACCAAAACCTACAACTCCACAGAAGAGGCCACAACCTACCATGGAAGCTGAAGCAGAGAACAAGCAAAGAGATAAGGAAGAAAGTGTACGTGTGTCCTGAACCCAGTTGCGTCCACCACGACCCGTCACGGGCCCTGGGGGACTTGACTGGGATCAAGAAACACTTCTGTAGGAAGCATGGTGAGAAGAAGTGGAAGTGTGAGAAGTGTTCAAAGAAGTATGCAGTTCAATCTGATTGGAAAGCGCATTCCAAGACCTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACTCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCCTTCTGTGATGCACTTGCACAAGAGACAGCAAGAACCACCACCACCACTTCAACAACAACAATACCCCAACTTCATCATCAATTCAATAATCCCCAAATTTTCCCATTGAAGAAAGAGCCATTACAGTTACACCACCAAAGTTTCAACCTTGTTAGGACAGAACTACCCCCATGGCTTGGAAGTAGCAGTAGTAGTAGTAATACTCCAACCCCATCACAAAATAATCATCAAGGTCAAGACTTTTTGAATCTCCATGAAAATAATGAGAACCCAAATCCAAATCCAAACCCTAACCCTAGGCTTGTAGGTGTTGGTGGTCCCACAATTGAAGGGTACCCTTCAGCTCACATGTCAGCAACAGCTTTGCTGCAAAAAGCAGCTCAGATGGGTGCAACCATGAGCAGCAGCATTGGGCCCCACCATCAAAGTCACGTGTCTGTTAATCCTTCTGCCACTCTTAATCACTTTCCTTTGAATTTGTCCTCACGTGATCACCACCACCATAACCATAACCATATCACCACAACCACCACCACCACTACCACCACAACTGCTGCTCCTTCTTCTTCTTCTTCTCTTCTTCATGATGTCATGATGATGAACTCTTTCTCTTCTGGATTTGAAGCGGCACAGTTTGATGATCCCTTTGGTGGAATTCTTGTTAGTAATAATAATATCACAAAGAAAGATGGTGATGATAATGGTAACGGTAATGGTAATGATGGCAATAATAATAATAACTTCTTGTTGCATGATACTCTTCCAAAGGCAACAACCACCACCGCCAATGACCGTGGTGGTGGCCGTGGCGGCGGTGCAAAAGAAGAGTTGACGAGGGATTTCTTGGGTCTAAGGCCACTTTCCCATAGTGACATTCTCAACATTGCTGCTATGGGAAACTGTATGAATGATCAGCAAAACCTACCTCAAAAGCATTGGTAA 1602 0.4419 MSMMKSLIFQQQQNQQQQQVVVVEENMSNLTSASNEGNNSVSSGTRTEIGTFMTPPPTSSDTSTQPPSKKKRNLPGNPDPDAEVIALSPKSLLATNRFMCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQETARTTTTTSTTTIPQLHHQFNNPQIFPLKKEPLQLHHQSFNLVRTELPPWLGSSSSSSNTPTPSQNNHQGQDFLNLHENNENPNPNPNPNPRLVGVGGPTIEGYPSAHMSATALLQKAAQMGATMSSSIGPHHQSHVSVNPSATLNHFPLNLSSRDHHHHNHNHITTTTTTTTTTTAAPSSSSSLLHDVMMMNSFSSGFEAAQFDDPFGGILVSNNNITKKDGDDNGNGNGNDGNNNNNFLLHDTLPKATTTTANDRGGGRGGGAKEELTRDFLGLRPLSHSDILNIAAMGNCMNDQQNLPQKHW 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00679 533 MobiDBLite consensus disorder prediction 447 471 - -
Aip09g00679 533 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 120 IPR013087 -
Aip09g00679 533 MobiDBLite consensus disorder prediction 28 71 - -
Aip09g00679 533 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 29 520 - -
Aip09g00679 533 MobiDBLite consensus disorder prediction 279 311 - -
Aip09g00679 533 SMART c2h2final6 139 169 IPR013087 -
Aip09g00679 533 SMART c2h2final6 174 194 IPR013087 -
Aip09g00679 533 SMART c2h2final6 98 120 IPR013087 -
Aip09g00679 533 SUPERFAMILY beta-beta-alpha zinc fingers 97 194 IPR036236 -
Aip09g00679 533 Pfam Zinc-finger double-stranded RNA-binding 98 120 IPR022755 -
Aip09g00679 533 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 29 520 - -
Aip09g00679 533 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Aip09g00679 533 Gene3D Classic Zinc Finger 79 144 - -
Aip09g00679 533 MobiDBLite consensus disorder prediction 28 83 - -
Aip09g00679 533 Gene3D Classic Zinc Finger 152 232 - -
Aip09g00679 533 MobiDBLite consensus disorder prediction 279 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00679 Aip-Chr9 8235258 8239010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00679 23 523 IDZ Gene Family AT1G55110 45.251 4.83e-123 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip09g00679 zf-C2H2_jaz 6.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00679 K25870 - gmx:100808344 526.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00679 09 8235258 8239010 Aip09g00679 09 8235258 8239010 ECH
Aip08g00250 08 1836257 1839245 Aip09g00679 09 8235258 8239010 PCT