Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00675 ATGAGCTCCTCAAACTCCACCATTACAACACGCACTGGCAACAGCACCACCCAGGCCTGTGCTGCCTGCAAATACCAACGCCGCAAATGCGCTCCCGATTGCATTCTCGCCCCCTATTTCCCCCATGACCGCCAACGCCAGTTCCTCAACGCTCACAAGCTTTTCGGCGTAAGCAACATCACCAAGATCATCAAGGTCCTTAATCCTCACGAAAAGGACGAAGCTATGAAAACCATCATCTTTCAATCCGATATGCGAGCCAAGGACCCCGTTGGCGGTTGCTATCGCATGGTACAAGATCTTCAGGCTCAGATCGAGTTTCACCTGGCCGAGTTGGAGCTCGTCCTTCAACAATTGGCTATACTTAGAGCCCAGGCCCAACATCAACAGGCCCAACATCTTTATAACCAAACCGCCACCAGTAATATTAATGTCAGCGTCAACGGAGATGACAGTATCAATTCAGATCCGTTGACGCTGTACAGTTCTGGTGGCGGTGGCGGCCTTGTTGTTGGTGGTAATGGGGTTAACCATTACCATTACCTTCAACAAATGCCGCATCACGAGCAGTGTATGATGGTGCAAGAGGTGAATGATAGCAGTAGCAACAACGGTACCCCTTTGCAAGAACATGCTAACATGTGGTCCATGCAAAATTCGCTATCGTCGTTGTCGTTGCAGGGGCAGAATAGTAACTGTAGTGTTGGTGATGAGTATGATCATAAGCCAATGCTTGATATGCCTTCCGATGACAGAAATGAACTTGGATTTGAGCCTCAAGATTTAGTTCAGCGCAGTGATGAAGCAGTTTTGTTTAAGATAGATGATGCTGTAATAAAAGCAGAAACTGATTGCTTCCAACAAGTTCAAGACCATGATCTGAAAGGTGCAGCAACTTTGTTTACACTCACAAATTGTACTAGCTGA 927 0.4714 MSSSNSTITTRTGNSTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKVLNPHEKDEAMKTIIFQSDMRAKDPVGGCYRMVQDLQAQIEFHLAELELVLQQLAILRAQAQHQQAQHLYNQTATSNINVSVNGDDSINSDPLTLYSSGGGGGLVVGGNGVNHYHYLQQMPHHEQCMMVQEVNDSSSNNGTPLQEHANMWSMQNSLSSLSLQGQNSNCSVGDEYDHKPMLDMPSDDRNELGFEPQDLVQRSDEAVLFKIDDAVIKAETDCFQQVQDHDLKGAATLFTLTNCTS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00675 308 Coils Coil 98 132 - -
Aip09g00675 308 Pfam Lateral organ boundaries (LOB) domain 19 114 IPR004883 -
Aip09g00675 308 ProSiteProfiles LOB domain profile. 18 119 IPR004883 -
Aip09g00675 308 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 13 242 - -
Aip09g00675 308 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00675 Aip-Chr9 8214356 8216783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00675 18 261 AS2 family AT3G13850 48.387 4.07e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip09g00675 LOB 3.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00675 - - pvu:PHAVU_010G138500g 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00675 09 8214356 8216783 Aip09g00675 09 8214356 8216783 ECH