Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00644 ATGGGGTTGAAGCTGATTCTGCTGCTGATTAAGCTACATTTAGTGCTCAGCACTCAACAGCTTCATGAATATGAAGCCACCAATCCACACCATTCAAGAGCAAGTACTCAGTTTAGTATTGCAATCCCACCATTGAAATCAACTTCTGGAGTTTCCAAAAGCACTGCACATGCTCCTTCAAAATCATCTTCCAGTATTCCTGAAAGTATTGCAATGCCACCTTCTAAGCCAATTCAAAGAACTCATGGAAGGAAATGGACACATAGTTCTATGGATTCTCCAATATCACATTATAAGCATCACTATTCGAGAAAAAGGTCCGGCAACCTGACCCCTGCGCCGGCCTATCCAATCCATCCTCCTGCTTACAGCTATCAAGGTCCTTCAGTCTCCAAGTTGCAGCCTCCATTCTCTTCACCAAAGAACAAGGATTTTCGCGCACCTGCACCTTCACTGGCACCATCACCAGCGATTATGTCAAGCCACCTTAACGTGCCCTCTCATTCACCTAGAATTGCACCTCTGAGTTCATCATTGAAGAAGACTAAGGCACAGCCACCAGCTGCATATTCTTTTGTTCTGCCACCTCCACCTCCTAATAAGGATTGTTTGTCCATGACTTGCTCTGATCCCTTGACATACACGCCACCCGGTTCGCCTTGTGGTTGTGTATTGCCTCTTCAAGTAAAACTCCAAATCGGCATTGCAATATCCAAGTTTTTCCCTTTGGTTTCAAAGCTTGCTGAGGAAGTTGCAGCCGGTCTTTCGCTGAATCGCAGCCAAGTTCGCATTGTAGGAGCTGATGCTGCTAATCTACAACTAGAGAAAACCAATGTTCTCATAAACTTGGTACCAACAGGAGTAAAATTCAATGACACCACTGCTTTCTCCATATATCAGAAACTCTGGCACAAGAAGGTTCTTAGGCATGCTTCACTCTTTGGTGCTTATGAAGTTCTCTATGTCCAATACCCAGGTCTTCCACCATCGCCACCTTCCGCGTCCAATGGTATAGACAATGGGCCATATATCAGTGGTGATAACAATGGAACAATAATGAAACCTTTAGGAGTAGATGTCTCAAGGAAGACAAAAGGAGAGAGTAATAATGGAAGAATGATTGTTGTAATTGTATTGTCATCAGTTACTGCTTTTGTTATATTCATTGGACTTGCTTGGCTTTGTTTGTTGAAGTACAGATCCTGTGTCATCAAACCGGAACAAGGTCCAGATGTTTTGATTTCACCCTCTTCAAAACTATCTGGTACTCCTACAGAATTAGCTCATGGGAAAATGCAAAGTTCAGGATCAATGTCCTTCAATTCAGGGTCAATAACATACACAGGAGCTGCTAAGATATTTTCATTGAATGAGTTAGAGAAAGCAACAAATAACTTTGATTCTTCAAGAATATTAGGAGAAGGTGGCTTTGGTCTTGTATACAAGGGAATTCTAAATGATGGGAGGGATGTAGCAGTGAAGATCCTTAAAAGAGACGATCAGCGTGGTGGTCGCGAGTTCTTGGCAGAAGTTGAGATGCTTAGCCGGCTGCACCATAGAAATTTAGTTACATTGTTAGGTATCTGCATAGAGAGAAAGACCCGGTGCCTAGTCTATGAACTAGTCCCTAATGGGAGTGTGGAATCTCACCTGCATGGTGCTGACAAGGAAACTAGTCCACTAGATTGGAATTCGAGAATGAAGATTGCGCTTGGTGCAGCTAGGGGATTGGCTTATCTTCATGAGGATTCAAATCCATGTGTCATACACAGGGATTTCAAGTCCAGCAACATCTTGTTAGAAGATGACTTTACACCAAAAGTTTCGGATTTTGGATTGGCTAGAACGGCATTAGAGGAGGGAAACAAGCATATCTCCACCCATGTTATGGGAACATTTGGATACTTGGCTCCTGAATATGCAATGACAGGCCACCTTCTTGTAAAGAGTGATGTATACAGCTATGGAGTAGTACTACTTGAGCTCCTAACAGGAAGAAAGCCTGTGGATTTTTCACAACCACCAGGCCAAGAAAACCTTGTTACTTGGGCTCGTCCGCTTCTAACAAGTAAGGAGGGCTTAGAGATGATCATAGATCCTGTTGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCGCAGCGATTGCATCCATGTGTGTGCAGCCAGAAGTGTCTCAAAGACCATTCATGGGAGAAGTAG 2223 0.4238 MGLKLILLLIKLHLVLSTQQLHEYEATNPHHSRASTQFSIAIPPLKSTSGVSKSTAHAPSKSSSSIPESIAMPPSKPIQRTHGRKWTHSSMDSPISHYKHHYSRKRSGNLTPAPAYPIHPPAYSYQGPSVSKLQPPFSSPKNKDFRAPAPSLAPSPAIMSSHLNVPSHSPRIAPLSSSLKKTKAQPPAAYSFVLPPPPPNKDCLSMTCSDPLTYTPPGSPCGCVLPLQVKLQIGIAISKFFPLVSKLAEEVAAGLSLNRSQVRIVGADAANLQLEKTNVLINLVPTGVKFNDTTAFSIYQKLWHKKVLRHASLFGAYEVLYVQYPGLPPSPPSASNGIDNGPYISGDNNGTIMKPLGVDVSRKTKGESNNGRMIVVIVLSSVTAFVIFIGLAWLCLLKYRSCVIKPEQGPDVLISPSSKLSGTPTELAHGKMQSSGSMSFNSGSITYTGAAKIFSLNELEKATNNFDSSRILGEGGFGLVYKGILNDGRDVAVKILKRDDQRGGREFLAEVEMLSRLHHRNLVTLLGICIERKTRCLVYELVPNGSVESHLHGADKETSPLDWNSRMKIALGAARGLAYLHEDSNPCVIHRDFKSSNILLEDDFTPKVSDFGLARTALEEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDFSQPPGQENLVTWARPLLTSKEGLEMIIDPVVXXXXXXXXXXXXXXXXKSQRLHPCVCSQKCLKDHSWEK 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00644 740 Pfam Protein tyrosine and serine/threonine kinase 469 669 IPR001245 GO:0004672|GO:0006468
Aip09g00644 740 MobiDBLite consensus disorder prediction 49 70 - -
Aip09g00644 740 CDD STKc_IRAK 472 700 - -
Aip09g00644 740 PANTHER OS01G0750732 PROTEIN 7 703 - -
Aip09g00644 740 Gene3D Transferase(Phosphotransferase) domain 1 542 731 - -
Aip09g00644 740 Gene3D Phosphorylase Kinase; domain 1 439 541 - -
Aip09g00644 740 ProSitePatterns Protein kinases ATP-binding region signature. 472 494 IPR017441 GO:0005524
Aip09g00644 740 MobiDBLite consensus disorder prediction 49 164 - -
Aip09g00644 740 ProSitePatterns Serine/Threonine protein kinases active-site signature. 588 600 IPR008271 GO:0004672|GO:0006468
Aip09g00644 740 PANTHER OS01G0750732 PROTEIN 7 703 - -
Aip09g00644 740 ProSiteProfiles Protein kinase domain profile. 466 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g00644 740 SUPERFAMILY Protein kinase-like (PK-like) 445 691 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00644 Aip-Chr9 7551792 7556535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00644 200 699 Receptor kinase-like Gene Family AT5G56890 62.035 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Aip09g00644 PK_Tyr_Ser-Thr 5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00644 - - gmx:100814040 1023.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00644 09 7551792 7556535 Aip09g00644 09 7551792 7556535 ECH
Aip08g00245 08 1776145 1780068 Aip09g00644 09 7551792 7556535 PCT