LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip09g00627	ATGCCAAGAGTGACTAGTGCTGTTTTGATTGGAGTTTATGCATTGGTCTCATTTAGCAGTGCTTTTTTTTGTGTATCTGAGGCTTCATCAGATTTGAGTATTCTGTACCTTGATATACCTTATTCCATCACTTTTGTAGCTATTGAAATTGTGGTGATAATTGGTATAATGGCTTCAGTCACATGGCAAGTTCTAATAGTTGCAATTCCTGCTACGCTAGCATCAAAATACGTTCAGGGATATTATCAAGCCTCTGCAAGAGAAATAATAAGGATCAATGGAACAACCAAAGCACCAGTGATGAATTTTGCAGCTGAGACATCACTTAGAGTGGTTACTGTTAGAGCATTCAACATGGTGGATAGATTTGTCAAGAACTACCTAAAACTTGTAGAAACAGATGCATCACTATTCTTTCATTCTAATGTGACCATGGAATGGTTGATTATAAGGATTGAAACACTTCAAAACTTGACAGTCTTCACTGCAGCCTTGTTACTTATTCTAGTTCCTATGGATTATGTGTCCCCAGTCCTGAAAGGAATCACTTGCACATTCAAAGAAGGGAGTAGAGTGGGAGTTGTAGGAAGGACAGGAAGTGGAAAAACAACACTTATAAGTGCTTTGTTCCGATTGGTTGAGCCTTCAAGAGGTAACATTATTATTGATGAGATTGACATATGCTCATTGGAGTTGAAGGATTTGAGAATGAAGCTTAGTATTATCCCTCAAGAAGCAACTCTTTTCAAGGGTAGCATTACAACAAACTTGGACCCTTTAGGCCTTTACTCAGATGATGAAATATGGAAGGTGAACAACTAA	822	0.3796	MPRVTSAVLIGVYALVSFSSAFFCVSEASSDLSILYLDIPYSITFVAIEIVVIIGIMASVTWQVLIVAIPATLASKYVQGYYQASAREIIRINGTTKAPVMNFAAETSLRVVTVRAFNMVDRFVKNYLKLVETDASLFFHSNVTMEWLIIRIETLQNLTVFTAALLLILVPMDYVSPVLKGITCTFKEGSRVGVVGRTGSGKTTLISALFRLVEPSRGNIIIDEIDICSLELKDLRMKLSIIPQEATLFKGSITTNLDPLGLYSDDEIWKVNN	273

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip09g00627	273	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	176	271	IPR027417	-
	Aip09g00627	273	Pfam	ABC transporter	179	271	IPR003439	GO:0005524
	Aip09g00627	273	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY C	26	178	-	-
	Aip09g00627	273	PANTHER	NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED	26	178	-	-
	Aip09g00627	273	PANTHER	NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED	178	271	-	-
	Aip09g00627	273	Pfam	ABC transporter transmembrane region	42	165	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
	Aip09g00627	273	Gene3D	ABC transporter type 1, transmembrane domain	4	174	IPR036640	GO:0005524\|GO:0016021
	Aip09g00627	273	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY C	178	271	-	-
	Aip09g00627	273	Gene3D	-	175	273	IPR027417	-
	Aip09g00627	273	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	47	169	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
	Aip09g00627	273	SUPERFAMILY	ABC transporter transmembrane region	31	168	IPR036640	GO:0005524\|GO:0016021

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip09g00627	Aip-Chr9	7381841	7382993	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip09g00627	178	257	Calmodulin-binding Proteins	AT2G36910	35.000	8.76e-11	60.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip09g00627	-		-	gmx:100790301	249.595