Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00563 ATGGTGAAGTTCTTGAAACCAAACAAAGCGGTTATTGTGCTGCAAGGTCAATACACGGGTCAAAAAGCCGTCATCATACGCGCCTTCGACGATGGCACCCGCGACCGCCCCTACGGCCACTGCCTCGTCGCCGGGATCAAGAAGTACCCTTCCAAGGTTGTTAAGAGGGACTCCGCCAAGAAGACGGCGAAGAAGTCGCTCGTCAAGGCATTCGTTAAGATGGTTAACTACCAACACGTGATACCCACGCGCTACACGCTTGACGTGGATTTGAAGGACGCCGTCACAGTCGAGTCTCTTTAG 303 0.5347 MVKFLKPNKAVIVLQGQYTGQKAVIIRAFDDGTRDRPYGHCLVAGIKKYPSKVVKRDSAKKTAKKSLVKAFVKMVNYQHVIPTRYTLDVDLKDAVTVESL 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00563 100 CDD KOW_RPL27 6 88 IPR041991 -
Aip09g00563 100 SUPERFAMILY Translation proteins SH3-like domain 2 92 IPR008991 -
Aip09g00563 100 Pfam Ribosomal L27e protein family 52 99 IPR001141 GO:0003735|GO:0005840|GO:0006412
Aip09g00563 100 PANTHER 60S RIBOSOMAL PROTEIN L27 1 100 IPR001141 GO:0003735|GO:0005840|GO:0006412
Aip09g00563 100 Gene3D - 1 100 IPR038655 -
Aip09g00563 100 PANTHER 60S RIBOSOMAL PROTEIN L27 1 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00563 Aip-Chr9 6209942 6210244 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00563 1 100 Cytoplasmic Ribosomal Protein Gene Family AT4G15000 76.000 2.65e-56 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00563 K02901 - jre:108985511 177.948