Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00561 ATGGTGAAGTTCTTGAAACCAAACAAAGCGGTTATCGTGCTGCAAGGCCGATACGCGGGTCGCAAAGCCGTCATCATACGCGCCTTCGACGATGGCACCCGCGACCGCCCCTACGGCCACTGCCTCGTCGCCGGGATCAAGAAGTACCCTTCCAAGGTTGTGAAGAGGGACTCCGCCAAGAAGACGGCGAAGAAGTCACGCGTCAAGGCGTTCGTTAAGATGGTTAACTACCAGCACGTGATGCCCACGCGCTACACGCTTGACGTGGATTTGAAGGACGCCGTTACGATCGAGTCGCTTCAGTCGAAGGATAAGAAGGTTGCGGCGCTTAAAGAGACCAAGAAGAGGCTCGAGGAGAGGTTCAAGACTGGCAAGAATCGTTGGTTCTTCACCAAGCTCAGATTCTAA 408 0.5466 MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRPYGHCLVAGIKKYPSKVVKRDSAKKTAKKSRVKAFVKMVNYQHVMPTRYTLDVDLKDAVTIESLQSKDKKVAALKETKKRLEERFKTGKNRWFFTKLRF 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00561 135 ProSitePatterns Ribosomal protein L27e signature. 124 135 IPR018262 GO:0003735|GO:0005840|GO:0006412
Aip09g00561 135 SUPERFAMILY Translation proteins SH3-like domain 2 135 IPR008991 -
Aip09g00561 135 CDD KOW_RPL27 6 88 IPR041991 -
Aip09g00561 135 PANTHER 60S RIBOSOMAL PROTEIN L27 1 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
Aip09g00561 135 Pfam Ribosomal L27e protein family 52 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
Aip09g00561 135 Coils Coil 100 127 - -
Aip09g00561 135 PANTHER 60S RIBOSOMAL PROTEIN L27 1 135 - -
Aip09g00561 135 Gene3D - 1 135 IPR038655 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00561 Aip-Chr9 6201368 6202381 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00561 1 135 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 80.741 3.01e-81 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00561 K02901 - csv:101212413 251.136