Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00560 ATGGTGCCATCACCAGATAATACTAGTAGCCACGGTAGAGATTGTGGAAAGCTTCTTGCCCCATCATCAAACTCATGTAAGCTACTAAAAAAATATCCGCAAAATAAGAGACGGTTACAGTGTAAGTTTTGCAACAAGAAATTCTCCAATAGCCAAGCTTTGGGAGGGCATCAGAATGCACACAAATTGGAGAGAGCCGCGGTGAAGAGAGACAACATTCTCGCCATGGCGTCTGCTTATAGCAACTACTTACCACCATTTCAGTCTAATATGCAAAATTATTATTCAAATTTTTCTGCTTTTAGTCATAGTAGTAGAACATTAGGGATGCAACAACCACAAGCAATGATTCATAATAGGTCTTCAACTGCACTTGGACCTGGATACCTTCATAATATATTGTTGGGAAATCAAATCATGGATCTTCAATGCAGCAGGCAAAAAGAAATATTGACAGTGAATCTGTTACCACAACAGTCACCGTTGAGTTTAGGTGAAAACATGAATCCAAACCAAACAAATAAACAACAACAACAACCAGGTGCAGGGAATAACAAACCTCAAGGAGAGATCGATTTGACACTCAAGCTCTAA 594 0.3923 MVPSPDNTSSHGRDCGKLLAPSSNSCKLLKKYPQNKRRLQCKFCNKKFSNSQALGGHQNAHKLERAAVKRDNILAMASAYSNYLPPFQSNMQNYYSNFSAFSHSSRTLGMQQPQAMIHNRSSTALGPGYLHNILLGNQIMDLQCSRQKEILTVNLLPQQSPLSLGENMNPNQTNKQQQQPGAGNNKPQGEIDLTLKL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00560 197 MobiDBLite consensus disorder prediction 161 197 - -
Aip09g00560 197 SUPERFAMILY beta-beta-alpha zinc fingers 36 66 IPR036236 -
Aip09g00560 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Aip09g00560 197 MobiDBLite consensus disorder prediction 161 185 - -
Aip09g00560 197 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 32 197 IPR044246 GO:0009788
Aip09g00560 197 Gene3D Classic Zinc Finger 22 83 - -
Aip09g00560 197 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00560 Aip-Chr9 6198203 6199823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00560 35 119 C2H2 Transcription Factor Family AT1G24625 35.294 8.42e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip09g00560 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00560 - - ahf:112708745 309.301