Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00552 ATGAAAACCCTAGCACGGAAACCGCAACCGCCGCAGCCATTCCTTTTCTTTAAGATGGCAGTTACATTGTATGACCTTGGCTCTGCATCTGGGTTGAAGAAGCTTGATGAGTACCTTCTCACCCGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGACCTTACAGTGTATGCAGCTTTATCAAAAGTTCCATCTGCTGAATATGTGAATGTGTGCAGGTGGTACAAGCATATCGATGCATTGTTGAGAATCTCGGGTGTTTCTGGTGAGGGATCTGTTGTCACTGTGAAGTCTTCTCTCGTCGCTGAAGCTGTTGCCACTCCTCCACCAGCTGACTCTAAGGCAAGTATTTTAATAATAGATACAGGCTGCATTCATTTGTTTTTGCTGTTTTCATTTTCAGCTGGAAAATCATCTGTTTTGATGGATATCAAGCCATGGGATGATGAAACTGACATGAAAAAGCTTGAAGAAGCAGTGAGAGGTGTTCAGATGGAAGGATTGCTTTGGGGAGCATCCAAACTTGTTCCTGTTGGGTATGGTATCAAGAAACTGCAAATCATGCTTACTATTGTGGATGATTTGGTCTCTGTCGATTCGCTCATCGAGGAGCAACTTACAGTCGAGCCGATCAACGAATATGTCCAGAGTTGTGACATTGTTGCTTTCAACAAAATATAA 684 0.4327 MKTLARKPQPPQPFLFFKMAVTLYDLGSASGLKKLDEYLLTRSYITGYQASKDDLTVYAALSKVPSAEYVNVCRWYKHIDALLRISGVSGEGSVVTVKSSLVAEAVATPPPADSKASILIIDTGCIHLFLLFSFSAGKSSVLMDIKPWDDETDMKKLEEAVRGVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEQLTVEPINEYVQSCDIVAFNKI 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00552 227 CDD EF1B 136 227 IPR014038 GO:0003746|GO:0006414
Aip09g00552 227 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 216 227 IPR001326 GO:0003746|GO:0005853|GO:0006414
Aip09g00552 227 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 136 227 - -
Aip09g00552 227 Gene3D - 134 227 IPR014717 -
Aip09g00552 227 Pfam EF-1 guanine nucleotide exchange domain 140 227 IPR014038 GO:0003746|GO:0006414
Aip09g00552 227 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 19 118 - -
Aip09g00552 227 SUPERFAMILY eEF-1beta-like 137 227 IPR036219 -
Aip09g00552 227 Gene3D - 19 100 - -
Aip09g00552 227 SMART EF1_GNE_2 138 227 IPR014038 GO:0003746|GO:0006414
Aip09g00552 227 PANTHER RIPENING REGULATED PROTEIN DDTFR10-LIKE 136 227 - -
Aip09g00552 227 PANTHER RIPENING REGULATED PROTEIN DDTFR10-LIKE 19 118 - -
Aip09g00552 227 SUPERFAMILY GST C-terminal domain-like 27 85 IPR036282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00552 Aip-Chr9 6062098 6064091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00552 25 227 Eukaryotic Initiation Factors Gene Family AT2G18110 68.142 2.18e-101 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00552 K03232 - gmx:100777627 303.908