Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00530 ATGGATGGTCTCAATTGGGATGATGCAACTTCACAAATTATTGCAAGAAATAACACACCAATCTTATGGAGCAAACAACAACAAAGTCAAGAAATAATTCTTACATACCCAAATTCAGAACATTTGATTAATTATCAGCAGCAAGATGCAGCAACAGTAGTGAAATCTTCAGCCATAATGTCACTATCAGAAAATGGACCTTACAACATGGATAATTATTACCAGATAAGTGGTAAGTACATGACAGATTTCAACATGGCCCAACAGCACCAACAACATGATCATCATCATCATCATTGCTTGATTTCATCAGCTACAAATAGCAACACTAATGATGATGATAATGATGGGATTTCAAAGATCTTGTTATCTGATGATGATTGCAAAAACTACTTGTGGAACTTGAGTAGTTCCACTACTGATGCTGCTTCCTCTGCTGAATCTGAAAGTAACAACAATAATAATAATGATGCTTCTATGCTTCCATGCTCTCATCAAAACTCCTCAGATCATCAACAATACATCAACCAAGGAGGACAATTCAATCCTATTATTATCACTAATAAGGATCACTCACCAATTATCAAGATAGAGAATCCACCAAGATCCAAGAAACCCAGATGGGAAAAGACTCCATTTTCATCAACAATAAGTTTCCAAAACCCAAATGAAGCATCAGCAACAATGTCATCAACTTCAACCACTGAAGAAGAAGCTGATCCAGAGGCTATAGCACAAATGAAGGAAATGATATACAGAGCAGCAGCATTCAGGCCAGTGAACTTGTTAGACTCAGATGAAGTGATTGAGAAGCCAAAGAGGAAGAATGTGAGGGTTTCAAGTGATCCACAAACTGTGGCTGCAAGGCAAAGAAGAGAGAAAATAAGCCAAAAAATCAGGGTTTTGCAGAAGATTGTTCCTGGTGGAACCAAAATGGACACTGCATCAATGCTTGATGAAGCTGCAAATTATCTTAAGTTTTTAAGGTCACAGGTTAAGGCACTTGAAAATTTAGGGAACAACACTACTAAAGTTGAAGCAATGGATTATAATAATTATAATAGTTTTGTATTCTCTTTCAACCCTTCCTTCCATTCTCAAATTCATTTTTGA 1113 0.3648 MDGLNWDDATSQIIARNNTPILWSKQQQSQEIILTYPNSEHLINYQQQDAATVVKSSAIMSLSENGPYNMDNYYQISGKYMTDFNMAQQHQQHDHHHHHCLISSATNSNTNDDDNDGISKILLSDDDCKNYLWNLSSSTTDAASSAESESNNNNNNDASMLPCSHQNSSDHQQYINQGGQFNPIIITNKDHSPIIKIENPPRSKKPRWEKTPFSSTISFQNPNEASATMSSTSTTEEEADPEAIAQMKEMIYRAAAFRPVNLLDSDEVIEKPKRKNVRVSSDPQTVAARQRREKISQKIRVLQKIVPGGTKMDTASMLDEAANYLKFLRSQVKALENLGNNTTKVEAMDYNNYNSFVFSFNPSFHSQIHF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00530 370 PANTHER TRANSCRIPTION FACTOR BHLH87 1 369 - -
Aip09g00530 370 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 369 IPR045843 GO:0003700|GO:0006355
Aip09g00530 370 MobiDBLite consensus disorder prediction 210 239 - -
Aip09g00530 370 MobiDBLite consensus disorder prediction 194 240 - -
Aip09g00530 370 Gene3D - 284 349 IPR036638 GO:0046983
Aip09g00530 370 MobiDBLite consensus disorder prediction 88 112 - -
Aip09g00530 370 Pfam Helix-loop-helix DNA-binding domain 289 328 IPR011598 GO:0046983
Aip09g00530 370 MobiDBLite consensus disorder prediction 195 209 - -
Aip09g00530 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 279 328 IPR011598 GO:0046983
Aip09g00530 370 SMART finulus 285 334 IPR011598 GO:0046983
Aip09g00530 370 Coils Coil 318 338 - -
Aip09g00530 370 CDD bHLH_AtIND_like 280 338 - -
Aip09g00530 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 284 337 IPR036638 GO:0046983
Aip09g00530 370 MobiDBLite consensus disorder prediction 143 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00530 Aip-Chr9 5751334 5753789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00530 76 364 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 43.827 3.74e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip09g00530 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00530 - - aip:107616571 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00530 09 5751334 5753789 Aip09g00530 09 5751334 5753789 ECH
Aip08g00215 08 1537789 1539467 Aip09g00530 09 5751334 5753789 PCT