Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00527 ATGGCTGCAACACGCATAGCTTCCTCCTTATTTTCTTCTTCAATCAACGCTACTGTCAAAAATTGCTTCGCTTCAAAAACCATAATAGACCCTCCTCTCATAGCAATATCCTCAAATCGCAAATTATCATCGCTGACCCAATGCTATTACTTTGTGGAACCTTTGTCATTAATTGGTGTTACTAAGTTATGGACGCCTAGAACTTCAGCAGCTGTTGTTGTTTCACAAGAAGAAATTGCTTTATCTGATGATACTGGCTTAGTTGAAGAGGAAAAAGAAAGGCAAGTGTTGGAAGAACAGCAACAAGATGATTCTGCTGAGTCCTCTGTTAACACTAAGCTTTACTTTGGAAATTTGCCGTACAGTGTTGATAGTGCACAACTTGCGGGGTTAATTGAGAGTTATGGAAGTGCAGAACTAATTGAGGTCACAGGGACAGTATCTCTTGGACCTTTTTTTTTTTATATATATAAAAGCAGAGGCTTTGCATTTGTGACAATGAGTTGCATTGAAGATTGCAATGCAGTAATAGAAAATCTTGACGGAAAAGAATTCTTGGGACGAACTTTACGGGTAAACTTCGCTGACAAACCAAAACCAAAAGAACCATTGTACCCTGAAACTGAGCATAAGCTATTTGTTGGAAATCTATCATGGTCAGTAACTTCTGAGAGCCTTACAGAAGCGTTTCAAGAATATGGAACCGTGGTTGGAGCTAGGGTCTTATATGATGGCGAAACAGGAAGGTCACGCGGCTATGGCTTCGTTTGCTATTCGACAAAGGCAGAAATGGAAGCTGCCCTTGCATCTCTGAATGATGTGGAACTAGAGGGACGGGCAATGCGTGTAAGCGTGGCGCAAGGTAAGCGTTCGCAAGGTTAA 882 0.4127 MAATRIASSLFSSSINATVKNCFASKTIIDPPLIAISSNRKLSSLTQCYYFVEPLSLIGVTKLWTPRTSAAVVVSQEEIALSDDTGLVEEEKERQVLEEQQQDDSAESSVNTKLYFGNLPYSVDSAQLAGLIESYGSAELIEVTGTVSLGPFFFYIYKSRGFAFVTMSCIEDCNAVIENLDGKEFLGRTLRVNFADKPKPKEPLYPETEHKLFVGNLSWSVTSESLTEAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTKAEMEAALASLNDVELEGRAMRVSVAQGKRSQG 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00527 293 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 158 195 - -
Aip09g00527 293 SUPERFAMILY RNA-binding domain, RBD 203 290 IPR035979 GO:0003676
Aip09g00527 293 PANTHER TRANSFORMER-2-RELATED 158 195 - -
Aip09g00527 293 SMART rrm1_1 113 193 IPR000504 GO:0003723
Aip09g00527 293 SMART rrm1_1 211 284 IPR000504 GO:0003723
Aip09g00527 293 Coils Coil 87 107 - -
Aip09g00527 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 191 IPR000504 GO:0003723
Aip09g00527 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 281 IPR000504 GO:0003723
Aip09g00527 293 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 86 143 - -
Aip09g00527 293 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 202 291 - -
Aip09g00527 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 197 IPR000504 GO:0003723
Aip09g00527 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 288 IPR000504 GO:0003723
Aip09g00527 293 Gene3D - 80 200 IPR012677 -
Aip09g00527 293 PANTHER TRANSFORMER-2-RELATED 86 143 - -
Aip09g00527 293 PANTHER TRANSFORMER-2-RELATED 202 291 - -
Aip09g00527 293 SUPERFAMILY RNA-binding domain, RBD 104 203 IPR035979 GO:0003676
Aip09g00527 293 Gene3D - 201 293 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00527 Aip-Chr9 5727774 5729945 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00527 160 289 Eukaryotic Initiation Factors Gene Family AT2G36660 32.168 1.13e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00527 - - adu:107464158 488.034