Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00501 ATGGGTTCTGGGTTCTGGGTTGAGTTCTGCTGCTTTTGTTGTTGTTGTTCATTTGATTTCATTGTTGTTCTTTGCTTCTGGTTATTATTGTTGTTTCATTGGTTGATTCCATTGTTGTTCTTCTGCGCTTCTGTTCTTCAACTTCTGCGATTCTGTTCTTCAGTTTTTGAGTTTGATGATGATGATGATGATGACGACGACGACGACGATGATGACCATGATGATGTGGTGGTGGtgTCTGAAAATCTGATAGTGTCCGCTGAAAACCCTAGACCCTTCGCGTTTCAGCAACATCTGTCTTCTTCTTCGTCTACTACTACTTCGGCCAACGCGAAACCCATGAGCAATGAGATCGCACAGATGCCTCCCCCTTCCACTCTCGGTTGCAGGTTCAATGCTATGCTCAAGCAGCGCGACGACGAGCTCAGGGCCACCGCCGGTCACGTGCCGCCTCCGTCTACGGAAGAAATCGTTCAGCTGTACGAGATGCTGCTGTCGGAGCTCACGTGCAATCAGAAGCTCATTATCACCGATCTCACCTTGATCGCTGTACACCAGAGGGAGCATGCCAGGGGCATCGCCGACGCTATCTGCGCTCGGATTCTCAAGGTGCCTGCAGAGCAAAAGCTTCCTTCACTCTATCTCTTGGACAGTATAGTGAAGAACTTTGGAGAGGAATATGTTGGATACTTTGCATTACGCCTGCCCGAAGTTTTCTGTGAGGCATACAGGCAGGTTCAGCCTCATTTGCACCCTGCTATGCGCCATCTCTTTGGCACCTGGTCAGAAGTCTTTCCACCGTCTGCCCTACGCAAGATTGAAGCTGAGTTGCAACTTTCTCAGGTAACTGCGGCAGTTGGAGCTCTCAACTGTGGATAG 879 0.4926 MGSGFWVEFCCFCCCCSFDFIVVLCFWLLLLFHWLIPLLFFCASVLQLLRFCSSVFEFDDDDDDDDDDDDDDHDDVVVVSENLIVSAENPRPFAFQQHLSSSSSTTTSANAKPMSNEIAQMPPPSTLGCRFNAMLKQRDDELRATAGHVPPPSTEEIVQLYEMLLSELTCNQKLIITDLTLIAVHQREHARGIADAICARILKVPAEQKLPSLYLLDSIVKNFGEEYVGYFALRLPEVFCEAYRQVQPHLHPAMRHLFGTWSEVFPPSALRKIEAELQLSQVTAAVGALNCG 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00501 292 SMART 558neu5 156 278 IPR006569 -
Aip09g00501 292 CDD CID_Pcf11 158 277 - -
Aip09g00501 292 ProSiteProfiles CID domain profile. 153 281 IPR006569 -
Aip09g00501 292 MobiDBLite consensus disorder prediction 97 119 - -
Aip09g00501 292 Gene3D - 151 279 IPR008942 -
Aip09g00501 292 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 125 283 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aip09g00501 292 SUPERFAMILY ENTH/VHS domain 152 277 IPR008942 -
Aip09g00501 292 Pfam CID domain 170 271 IPR006569 -
Aip09g00501 292 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 125 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00501 Aip-Chr9 5298274 5300693 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00501 130 288 C2H2 Transcription Factor Family AT4G04885 65.839 2.59e-64 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00501 K14400 - ahf:112776805 352.443