Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00472 ATGGGAAAAGCTACAAGGTGGTTGAAGGGTCTATTAGGAATGAAAAAGGAGAATAAAGAGAATAGTAATAAGGATCAACACCACATTGAAAATTCAGGGTCATTGGCAACAATAACATCTTCTTTTTCTTCTTCTTATGACAAGAAAGAGAAGAAAAGATGGAGTTTTGCTAAGCAAGTAGAGAAGGATAATAATAATAATAATAGAAACATTGTTGCTCCTTCCAATGGTGCAGCTTTGGATTCTTCTTCTGATGGTGCTTGGATTAGATCCTATATTGCTGACACTGAGAGTGAGCAGAACAAGCATGCAATTGCTGTGGCAGCTGCCACTGCCGCGGCTGCAGATGCCGCCGTGGCAGCTGCGCAGGCGGCGGTGGCAGTTGTTAGGCTGACAAGCCAAGGGAGAGGCACATTGTTCAGTGGCAGCAGAGACAAGTGGGCTGCTGTAAAAATCCAAACTTTCTTCAGAGGCTATTTGGCAAGGAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAAGCTCTTGTTAGAGGTTTTCTAGTTAGAAAGNNNNNNNNNNNAAAGAGGGCTGCCGCAACTCTTCACAGTATGCAGGCTCTAATTCGAGCTCAGGCCGCCGTCCGGTCGCAGCGCGCCCGCCGTTCCATGAGCAAAGACAATAGGTTCCTCCCGGAAGTTCTTGCAAGAAAATCTCTGGAACGATTTGATGAAACAAGGAGTGAATTCCACAGCAAAAGGATGATGATACCTACATCTTATGAAGCATCATTGAATGGATTTGATGAGTCTCCAAAAATTGTTGAAATTGACACTTACAAGACTAGATCATCAAGGTCAAGGCGTTACACCTCTACAATGTCCGAATGTGGCGAAGATCCGCCATACCACGCTGTCTCATCCCCTCTTCCTGGCCGAATCTCGGTCCCAGATTGCCGGCACCTTCAAGATTTCGATTGGTACTTGAGTGCCGACGAATGTAGGTATTCGACGGCACACAACACTCCAAGATTCGCAAACTACGCGCACCCTAAAATTGCCCCGGCCACACCGGCTAAAAGTGTGTGTGGAGGGGACACATTTTTTAGGCCTTATTCCAATTATCCAAATTACATGTCAAATACTCAATCTTTTAATGCAAAATTAAGGTGTCATAGTGCTCCAAAGCAAAGGCCTGAGCCAAAGAAGAGGCTTTCACTCAATGAAATGATGGCAGCAAGGAACAGCATAAGTGGTGTTAGAATGCATAGGCCATCCAATTTTCAAGGTCAAGAATCATGGAATTTTTGA 1293 0.4439 MGKATRWLKGLLGMKKENKENSNKDQHHIENSGSLATITSSFSSSYDKKEKKRWSFAKQVEKDNNNNNRNIVAPSNGAALDSSSDGAWIRSYIADTESEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGTLFSGSRDKWAAVKIQTFFRGYLARKALRALKGLVKIQALVRGFLVRKXXXXKRAAATLHSMQALIRAQAAVRSQRARRSMSKDNRFLPEVLARKSLERFDETRSEFHSKRMMIPTSYEASLNGFDESPKIVEIDTYKTRSSRSRRYTSTMSECGEDPPYHAVSSPLPGRISVPDCRHLQDFDWYLSADECRYSTAHNTPRFANYAHPKIAPATPAKSVCGGDTFFRPYSNYPNYMSNTQSFNAKLRCHSAPKQRPEPKKRLSLNEMMAARNSISGVRMHRPSNFQGQESWNF 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00472 430 MobiDBLite consensus disorder prediction 10 27 - -
Aip09g00472 430 Pfam Protein of unknown function (DUF4005) 331 413 IPR025064 -
Aip09g00472 430 ProSiteProfiles IQ motif profile. 198 227 IPR000048 GO:0005515
Aip09g00472 430 ProSiteProfiles IQ motif profile. 145 173 IPR000048 GO:0005515
Aip09g00472 430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 195 IPR027417 -
Aip09g00472 430 SMART iq_5 144 166 IPR000048 GO:0005515
Aip09g00472 430 SMART iq_5 167 188 IPR000048 GO:0005515
Aip09g00472 430 ProSiteProfiles IQ motif profile. 169 195 IPR000048 GO:0005515
Aip09g00472 430 Pfam IQ calmodulin-binding motif 172 185 IPR000048 GO:0005515
Aip09g00472 430 Pfam IQ calmodulin-binding motif 147 166 IPR000048 GO:0005515
Aip09g00472 430 PANTHER IQ-DOMAIN 5-RELATED 1 420 - -
Aip09g00472 430 MobiDBLite consensus disorder prediction 9 34 - -
Aip09g00472 430 Gene3D - 87 171 - -
Aip09g00472 430 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 420 - -
Aip09g00472 430 Coils Coil 429 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00472 Aip-Chr9 4983337 4986744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00472 1 416 IQD Protein Family AT3G16490 51.163 1.05e-101 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00472 - - adu:107463958 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00472 09 4983337 4986744 Aip09g00472 09 4983337 4986744 ECH
Aip08g00203 08 1394472 1395949 Aip09g00472 09 4983337 4986744 PCT