Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00467 ATGGATGATAGTAGAAGAAGGAGAAGAAGCAGCCACAACAAGTTTTCAGAGGAAAAGGAACTAGAACTAAGACTTGGTCCACCTGGTGAAGAAGAAGATGAAGAAGATGAAGAAAAAGATGAAGATTATTGGTCTCATCACAATGAAAACAAAAGAGAAAGAAACAGTGATGAATCAGATCAATCACCACTCTCTCTTGGTTACTTCTCATCCCAGAGAATTTACAACTACCACCAGGACCAGGCTACTAAGGCTAAAGCTTCATCATTTCTTCAGAACATGTCAATGGTGGGAAAGGAATCAAAGGATGCAATATCATCATCACAACCATGTCGTTCTGAAGTGATAGAGTTTCATAATGGTGCAGTCTGTGCAGAGAAGAAAGCATTATCATCACCTTCTTCTGCAAATACAGCTGCCCCCAACAGCTCTCAGAAAAGAAGTGCAGCTGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCATTCAGGAAGAACAATGCAAGTGGAAGCACTTTTTCTAAGCCCCCTCTTGGGTCCCACCACAACCATCATCATAATCTTAATCTTAATGTTGAAGACAAGGTTGCTAATAATACTACTAATAAGGAACATGTTAACAACATTAGTGGTACCCCTAATAAAGGCATGTTTGTGAAGATCAATATGGATGGAATTCCAATTGGGAGAAAAGTGGATATTAATGCTTATGGCAGCTATGACAAACTTTCCTCTGTTGTTGACCACCTCTTTAGAGACCTCCTTTCAGCTCAAAGAAGAGATTCCTGTGGTGGTGGAAGTATTAAAAAGCAAAAGCAAGAGGAAGAGAAAACAATGATAACAACGGGTGTATTAGATGGAAGTGGGGAATATACTCTTATTTATGAAGATAATGAAGGAGACAAGATGCTTCTTGGGGATGTCCCATGGCACATGTTTGTATCAACAGTGAAGAGATTGCGAGTGTTGAAGAAATCTGATCTTGCAGCTCTTTCACTTGGTGGTAAGCAAGGCCACATACACCACTCAAAATGA 1032 0.4031 MDDSRRRRRSSHNKFSEEKELELRLGPPGEEEDEEDEEKDEDYWSHHNENKRERNSDESDQSPLSLGYFSSQRIYNYHQDQATKAKASSFLQNMSMVGKESKDAISSSQPCRSEVIEFHNGAVCAEKKALSSPSSANTAAPNSSQKRSAAGPVVGWPPIRSFRKNNASGSTFSKPPLGSHHNHHHNLNLNVEDKVANNTTNKEHVNNISGTPNKGMFVKINMDGIPIGRKVDINAYGSYDKLSSVVDHLFRDLLSAQRRDSCGGGSIKKQKQEEEKTMITTGVLDGSGEYTLIYEDNEGDKMLLGDVPWHMFVSTVKRLRVLKKSDLAALSLGGKQGHIHHSK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00467 343 MobiDBLite consensus disorder prediction 41 59 - -
Aip09g00467 343 Gene3D - 210 335 - -
Aip09g00467 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 7 337 - -
Aip09g00467 343 MobiDBLite consensus disorder prediction 163 177 - -
Aip09g00467 343 Pfam AUX/IAA family 20 330 IPR033389 -
Aip09g00467 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 337 IPR003311 GO:0005634|GO:0006355
Aip09g00467 343 MobiDBLite consensus disorder prediction 1 26 - -
Aip09g00467 343 MobiDBLite consensus disorder prediction 129 185 - -
Aip09g00467 343 MobiDBLite consensus disorder prediction 130 149 - -
Aip09g00467 343 ProSiteProfiles PB1 domain profile. 215 324 IPR000270 GO:0005515
Aip09g00467 343 MobiDBLite consensus disorder prediction 1 65 - -
Aip09g00467 343 SUPERFAMILY CAD & PB1 domains 210 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00467 Aip-Chr9 4928116 4934432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00467 219 335 B3 DNA Binding Superfamily AT4G23980 29.060 5.58e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Aip09g00467 AUX_IAA 7.1e-66 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00467 K14484 - tcc:18596026 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00467 09 4928116 4934432 Aip08g00199 08 1377131 1378514 ECH
Aip09g00467 09 4928116 4934432 Aip09g00467 09 4928116 4934432 ECH
Aip08g00199 08 1377131 1378514 Aip09g00467 09 4928116 4934432 PCT