Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00465 ATGGTTCTTGTACGGATACCCCATTTGAGGTTCTTTCTGTTTCTGCTTCTTCATATTCACTGCATCAGCTGCTACAACACCACAACAACACCATTGGGCTGTACGGACACAGGCCGTGTCTGCACCTCTTTCTTGGCCTTTAAGCCTCAGAACCAAAGCTTAGCTGTGATTCAAAGCATGTTTGATGTGTTACCCGGTGACATCACTGTTGAGGATAGTGGTTGGGACTATGTGTTCATAAGGAAGAACTGTTCTTGTGCCTATGGCCTCAGGAAGTATGTGTCTAACACCACTTTTACTGTGAAATCCAATCAAGGGTATGTGTATGATTTGGTTATGGATGCTTATGATGGTCTTGCTTTGCCTCCAAACACAACAAGGAGGGCTAAGAATGGTGCTGTTGTGTCTTTGAGGTTGTTCTGTGGCTGCTCTAGTGGCTTGTGGAACTATCTGATGAGTTATGTTATGAGAGATGGTGACAGTGTTGAATCATTGGCAAGTAGATTTGGGGTTAGTATGGATAACATTGAGAGTGTGAATGGCATTGGTAATCCTGATAATGTCACGGTTGGTTCGGTTTATTATATACCTCTTGATTCAGCTCCAGGTGATCCCTATCCCATTAACAATACTGCTCCTCCAGCTCCTGTTCCCGCCCCATCTGTTGAGAATATCTCAGTACTTTTCCTCCAATCTCTAATTTTATTTTTTATTGCCTTTCTTTTCCTTGTAAATTCTCAACTTAGTTGCAATATTTCAGCTACTCGTGCAGTAATAAAAGGCATAGTTCTCTGTGTTTCTCTGAAGTCATCAAATTGTCGCTCTGAAGCCAGAAGTAATGAAAAAGATGCTGAGGGGAAGATATCTCATAAGTTCCATATTCTTAGAAATCCAAGTTTTTTCTGTGGTTCTGGGAGGTATATATGTGGCAAAACTGTAGAACAGAAGCAAACTGATGCCGAATCCAGTAATCACACGATTACCGTTCCCAAAGTTTCAACTCTTGGCCCTGATGTGTTTGACATGGATAAGCCTGTAGTTTTTACATATGAAGAGATTTTCGCCACAACTGATTGTTTCTCTGATTCAAATCTGCTTGGTCATGGAACCTATGGTTCTGTTTACTATAGCCTTCTTCGGGATCAGGAAGTTGCTATCAAAAGAATGACTGCTATGAAAACAAAAGAATTCATGTCAGAGATGAAAGTTCTATGCAAGGTCCATCATGCTAATCTGGTAGAATTGATCGGCTATGCGGCTAGTCAGGATGAGCTTTTCCTTGTTTATGAATATGCTCAAAAGGGTTCACTTAGAAGTCATTTGCATGATCCTCAAAATAAGGGTCATTCCCCACTTTCTTGGATCATGAGGGTCCAAATTGCTCTTGATGCCGCTCGGGGACTTGAATACATACATGAACACACTAAGACTCATTATGTCCACCGGGACATCAAGACGAGCAACATTTTGCTCGATGCTTCCTTTAGAGCAAAGATTTCGGATTTCGGGTTAGCAAAACTTGTTGGGAAAACAAATGATGGCGAAGTTTCAACAACCAAAGTTGTTGGTACTTATGGATATCTTGCACCAGAATACTTGAGTGATGGCCTTGCAACAACAAAGAGTGATGTCTATGCATTTGGTGTTGTCCTTTTCGAGATCATATCGGGGAGGGAGGCCATTATTCGAACAGAAGGAACGATGTCCAAAAATCCGGATAGGCGTTCATTGGCGTCTGTGATGTTGGCAGTCCTTAGGAACTCGCCGGATTCCGTGAGCATGTCAAACATGAGAGATTATATTGACCCAAATATGATGGATCTGTATCCCCATGATTGTGTATTTAAGATGGCCATGCTGGCGAAGCAATGCGTGGATGACGATCCGGTCTTACGGCCGGACATGAAACAAGTTGTGATATCTCTCTCACAGATTCTTCTTTCTTCAATTGAATGGGAAGCAACTCTGGCAGGGAATAGCCAAGTATTTAGTGGCCTTGTTCAGGGAAGATAG 2013 0.4218 MVLVRIPHLRFFLFLLLHIHCISCYNTTTTPLGCTDTGRVCTSFLAFKPQNQSLAVIQSMFDVLPGDITVEDSGWDYVFIRKNCSCAYGLRKYVSNTTFTVKSNQGYVYDLVMDAYDGLALPPNTTRRAKNGAVVSLRLFCGCSSGLWNYLMSYVMRDGDSVESLASRFGVSMDNIESVNGIGNPDNVTVGSVYYIPLDSAPGDPYPINNTAPPAPVPAPSVENISVLFLQSLILFFIAFLFLVNSQLSCNISATRAVIKGIVLCVSLKSSNCRSEARSNEKDAEGKISHKFHILRNPSFFCGSGRYICGKTVEQKQTDAESSNHTITVPKVSTLGPDVFDMDKPVVFTYEEIFATTDCFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTAMKTKEFMSEMKVLCKVHHANLVELIGYAASQDELFLVYEYAQKGSLRSHLHDPQNKGHSPLSWIMRVQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKTNDGEVSTTKVVGTYGYLAPEYLSDGLATTKSDVYAFGVVLFEIISGREAIIRTEGTMSKNPDRRSLASVMLAVLRNSPDSVSMSNMRDYIDPNMMDLYPHDCVFKMAMLAKQCVDDDPVLRPDMKQVVISLSQILLSSIEWEATLAGNSQVFSGLVQGR 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00465 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Aip09g00465 670 SMART LysM_2 153 197 IPR018392 -
Aip09g00465 670 ProSitePatterns Protein kinases ATP-binding region signature. 366 393 IPR017441 GO:0005524
Aip09g00465 670 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 33 670 IPR044812 GO:0019199|GO:0045087
Aip09g00465 670 CDD LysM 153 196 IPR018392 -
Aip09g00465 670 Pfam Protein tyrosine and serine/threonine kinase 364 640 IPR001245 GO:0004672|GO:0006468
Aip09g00465 670 ProSiteProfiles Protein kinase domain profile. 360 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g00465 670 SUPERFAMILY Protein kinase-like (PK-like) 338 642 IPR011009 -
Aip09g00465 670 Gene3D Transferase(Phosphotransferase) domain 1 433 656 - -
Aip09g00465 670 PANTHER BNAA06G02020D PROTEIN 33 670 - -
Aip09g00465 670 SUPERFAMILY LysM domain 152 197 IPR036779 -
Aip09g00465 670 Gene3D LysM domain 149 204 IPR036779 -
Aip09g00465 670 Pfam LysM domain 154 193 IPR018392 -
Aip09g00465 670 ProSiteProfiles LysM domain profile. 152 196 IPR018392 -
Aip09g00465 670 SMART serkin_6 360 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g00465 670 Gene3D Phosphorylase Kinase; domain 1 336 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00465 Aip-Chr9 4901959 4907166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00465 281 670 Receptor kinase-like Gene Family AT1G51940 76.154 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Aip09g00465 PK_Tyr_Ser-Thr 2.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00465 - - gmx:100796989 1073.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00465 09 4901959 4907166 Aip09g00465 09 4901959 4907166 ECH
Aip08g00196 08 1342661 1345358 Aip09g00465 09 4901959 4907166 PCT