Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00460 ATGAATCGGAGGTGCTCCGGGTGCAGCAAAAATGGTCACAACTCCAGAACATGCCCTTACTACTCCTCTGCGTCTCGCACCACCGTTACTACAGTGAAGCTCTTTGGGGTCCCCCTGTCCATGACCCACGGATCAGGATCATGCTCCGCCGCATCACCTAATCATAACTCTCCTTTCTCACACTACTCCTCTGACGGTTACGTGTTGGATAATGACCCATCAACCCCTGCCGCCACCATCAACTGCCACCATCCTCCTCCTTCCATAAACAAAGGGATTCCATGGAGCCAAGAAGAACATCGATTGTTCTTAATTGGGTTGGAGAAATTAGGAAAAGGAGACTGGCGTGGAATATCGCGAAATTTCGTTGTATCAAGAACTCCAACTCAAGTAGCAAGTCATGCTCAGAAGTACTTCATCCGGCTCCGGCAGAGCAACGCCACACCGCGAAAACGACGATCAAGCCTTTTCGACATGTTCCCAAATATGGCTTCAAATTCGGCTTCACTAAAAGAAGAACAAGTATTACTTCAACCTTCTAAGAACTCACAACTTAGCAATGTGGAAGAAGAGCTCAATGAAACTATAATGGGATCGAATGAGGCGACACCAGCGTCGCCGCTTCCCGGATTCTTCCGGCCGCCTTATCCGGCTCTCCCATTTTCCTCATGGCCATCAAGTGCATGTTCCTTTGGAGAAGCTACCCTAATCTTAGATGGAAGGCCATTGCATTAG 735 0.4871 MNRRCSGCSKNGHNSRTCPYYSSASRTTVTTVKLFGVPLSMTHGSGSCSAASPNHNSPFSHYSSDGYVLDNDPSTPAATINCHHPPPSINKGIPWSQEEHRLFLIGLEKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRLRQSNATPRKRRSSLFDMFPNMASNSASLKEEQVLLQPSKNSQLSNVEEELNETIMGSNEATPASPLPGFFRPPYPALPFSSWPSSACSFGEATLILDGRPLH 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00460 244 SUPERFAMILY Homeodomain-like 90 143 IPR009057 -
Aip09g00460 244 Gene3D - 93 144 - -
Aip09g00460 244 ProSiteProfiles Myb-like domain profile. 94 139 IPR001005 -
Aip09g00460 244 CDD SANT 94 139 IPR001005 -
Aip09g00460 244 SMART sant 91 141 IPR001005 -
Aip09g00460 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 143 IPR017930 -
Aip09g00460 244 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
Aip09g00460 244 PANTHER OS01G0187900 PROTEIN 1 194 - -
Aip09g00460 244 ProSiteProfiles Zinc finger CCHC-type profile. 3 19 IPR001878 GO:0003676|GO:0008270
Aip09g00460 244 ProSiteProfiles SANT domain profile. 95 143 IPR017884 -
Aip09g00460 244 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
Aip09g00460 244 PANTHER TRANSCRIPTION FACTOR KUA1 1 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00460 Aip-Chr9 4826416 4827536 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip09g00460 Myb_DNA-binding 1.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00460 - - aip:107617323 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00460 09 4826416 4827536 Aip09g00460 09 4826416 4827536 ECH