Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00415 ATGGAAGTGCCGGAATACTTCGTCGGTGGCTATTATGGCACCGGAGGAGACCAATTCTCAACGGAGAAGCGGCACGGCGTCGGCGGTGGTGACCAGAAGCACGGTGGCTATGGCGGCGGTGGTGAGCCGTTTGCCATTGACGACCTACTTGATTTCTCCAACGCCGACGCCATCATGTCCGACGGATTCTTTGAAAATGTCGCCGGAAACTCCTCCACCGACTCGTCCAACGTCACCGCGGTTGACAGCTGTAACTCCTCCGTCTCCGGTGGCGACAACCATTTCCCTGCCGGCATTGTCCCTCGTGCATTCTCCTCCGGCGATCCACAATTCTCCGGCGGTGAACTCTGCGTTCCGTATGATGACATGGCGGAACTGGAGTGGCTCTCGAACTTCGTGGAGGACTCGTTCTCCACCGAAGAAGATCTGAAAACGCTGCAGCTTCTCTCCGGCGGTGGCGCCGCTGCCATCAACGGCAGAAAACCTCAGACGCCGGAGTCATCATCTTCCTCGGAAAACGCGCTCCATCCTCCATTTGACACCGCGCGAAACGCACCGTTTCTTCTTCATCAGGAGACGCCGCTTCCAGGCAAAGCTCGCAGCAAGCGCTCACGCGCGGCGCCGGGGGATTGGTCCACGCGCTTGCTTCACCTCTCGACTCCTCCGCCGCCGAAACTCCAGACGTCTGCGATGGAGCATAAGCCTCCGACACCGAAAGTGGCGGCACCGACGATGACGAAGAGGAGGGAGGCGAATGCGGAGTGTTTGGGGAGAAAGTGTCTACACTGCGGCGCAGATAAGACGCCACAGTGGCGAACAGGGCCCATGGGCCCAAAGACTCTGTGCAACGCTTGCGGTGTGAGGTTTAAGTCGGGCCGACTTGTGCCTGAGTACAGGCCCGCGGCGAGCCCAACATTCGTTTCAACGAAGCACTCGAATTCTCATAGGAAGGTTCTGGAACTGAGGAGGCAGAAGGATATGCAGCGGCAGCAACAGCAGCAGCAGCAACTGATGAGTCAAACTTCCATTTTTGGTGTATCCAACGGTGGAGATGAGTTCTTAATCCATCATCATCATCATCATCCCCATCATCATCAACAACACCATTGTGGCCCTGATTTTAGGCATGTTATCTAG 1137 0.569 MEVPEYFVGGYYGTGGDQFSTEKRHGVGGGDQKHGGYGGGGEPFAIDDLLDFSNADAIMSDGFFENVAGNSSTDSSNVTAVDSCNSSVSGGDNHFPAGIVPRAFSSGDPQFSGGELCVPYDDMAELEWLSNFVEDSFSTEEDLKTLQLLSGGGAAAINGRKPQTPESSSSSENALHPPFDTARNAPFLLHQETPLPGKARSKRSRAAPGDWSTRLLHLSTPPPPKLQTSAMEHKPPTPKVAAPTMTKRREANAECLGRKCLHCGADKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRRQKDMQRQQQQQQQLMSQTSIFGVSNGGDEFLIHHHHHHPHHHQQHHCGPDFRHVI 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00415 378 MobiDBLite consensus disorder prediction 154 181 - -
Aip09g00415 378 MobiDBLite consensus disorder prediction 193 241 - -
Aip09g00415 378 ProSitePatterns GATA-type zinc finger domain. 260 285 IPR000679 GO:0006355|GO:0043565
Aip09g00415 378 PANTHER GATA TRANSCRIPTION FACTOR 9 1 378 - -
Aip09g00415 378 SMART GATA_3 254 304 IPR000679 GO:0006355|GO:0043565
Aip09g00415 378 MobiDBLite consensus disorder prediction 359 378 - -
Aip09g00415 378 Gene3D - 256 341 IPR013088 GO:0006355|GO:0008270
Aip09g00415 378 Pfam GATA zinc finger 260 293 IPR000679 GO:0006355|GO:0043565
Aip09g00415 378 PANTHER GATA TRANSCRIPTION FACTOR 1 378 - -
Aip09g00415 378 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 257 317 - -
Aip09g00415 378 CDD ZnF_GATA 259 306 IPR000679 GO:0006355|GO:0043565
Aip09g00415 378 ProSiteProfiles GATA-type zinc finger domain profile. 254 290 IPR000679 GO:0006355|GO:0043565
Aip09g00415 378 MobiDBLite consensus disorder prediction 161 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00415 Aip-Chr9 4314969 4316383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00415 37 378 C2C2-Gata Transcription Factor Family AT4G32890 42.776 1.10e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aip09g00415 GATA 2.2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00415 - - aip:107619293 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00415 09 4314969 4316383 Aip09g00415 09 4314969 4316383 ECH