Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00402 ATGATGGCTGGGAACCCTAATAATTGGTGGAGCATGAATCCATCTTCTTTGATCCCTTATACTCAATATGTGCTTGGATCTTCTTCTTCTTCTTCTTCAATTCCTTTCAATCCTTTGGTGGCTGAAATTCCAGAACCTTCTCCTCAGTCTTGGAGCCAACTTCTTTTCACTGGGTTACCAGGAGAAGAAGAGAGACTTGGATTCAATCATTTTCATCAATCAAAAAAGTTAGAAAACTGGGATGACCATAACATCCTCCTCAACAACAACAATAATCAACACAACACAAGAGTTGGTCCAAATAATAATAATAATAATAATAATATGATTGTTGATGGAATAATAAAGCAAGAGGTTTCCCAAAGTGGCAACTTGTACGGCCAAGAGGAGTTTCATGCTTCTAATGGGTCAACTTGGTCAACACATATGGTTCCCATTAATTCTTCATCACCTAGGTCAAGTGTCACTACCAATAATAATAACAATAATAATTTATTGGATTTCTCTTATAACAAGGTTGATCATAGCAAGAACAACCAACTACCTTATGCCACACCTCAGTGTAATAGCACATCAAGTGCTGGAATTTGCAAGAAAGCTAAGGGTCAATCAACTTCAAGCTTACCACCATTGAAGGTGAGAAAGGAGAAGCTTGGTGATAGAATAACAGCACTTCACCAGCTAGTTTCCCCATTTGGAAAGACTGACACAGCTTCTGTGTTGTTAGAAGCCATTGGATATATTAGATTCCTTCAGAGTCAAATTGAGGTGATGTTTCTCTCTACACACTCACTCACTCTCTCATCTGCAACTGCAAGCTATTCATCAGTGTCACTGTTGAATGATACTGGCCTGAAAAGAAAGGCAGCTTCAAGCCAGGATTCAAAAGATAATAAGGCAAAGGATTTGAGGAGTAGAGGATTGTGCTTGGTACCTGTATCCTTCACCCAACATGTTGGAAATGAAAATGGAGCTGATTTCTGGGCACCTGCATATGGTAGTGGATTCTAA 1011 0.3907 MMAGNPNNWWSMNPSSLIPYTQYVLGSSSSSSSIPFNPLVAEIPEPSPQSWSQLLFTGLPGEEERLGFNHFHQSKKLENWDDHNILLNNNNNQHNTRVGPNNNNNNNNMIVDGIIKQEVSQSGNLYGQEEFHASNGSTWSTHMVPINSSSPRSSVTTNNNNNNNLLDFSYNKVDHSKNNQLPYATPQCNSTSSAGICKKAKGQSTSSLPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEVMFLSTHSLTLSSATASYSSVSLLNDTGLKRKAASSQDSKDNKAKDLRSRGLCLVPVSFTQHVGNENGADFWAPAYGSGF 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00402 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 251 IPR011598 GO:0046983
Aip09g00402 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 212 264 IPR036638 GO:0046983
Aip09g00402 336 CDD bHLH_AtbHLH_like 212 258 IPR045239 -
Aip09g00402 336 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 32 323 - -
Aip09g00402 336 Gene3D - 212 271 IPR036638 GO:0046983
Aip09g00402 336 PANTHER OS05G0228400 PROTEIN 32 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00402 Aip-Chr9 4138871 4147959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00402 198 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 54.701 1.67e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00402 - - aip:107617848 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00402 09 4138871 4147959 Aip09g00402 09 4138871 4147959 ECH