Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00392 ATGGAGGTGTTCAAAGCAGTTGCCAAGAACGAACTTGCAACTCATGGAAGTGTTGCTATCAGAGCTGACCAGAAGAGTTATAGTTACAGGCAACTAATCTTGTCCGCAGAGAAGATATCTAATATATTGTGTGGCAGTGATGTAAAGACAGGAAACCTTAGTGGAGCTCGGATAGGAATTGTAGCCAAACCCTCTGCCGAATTTGTAGCTGGAGTACTTGGGACTTGGTTTAGTGGAGGTGTTGCTGTTCCACTTGCACTAAGCTATCCAGAACCAGAGCTCTTACATGTGATTAATAATTCGGATGTGTCCACAATACTGAGTACTGAAGATCATAGTGAATTAATGCAAAACCTTGCCAATAAAACCTCTTCTCAGTTTTTTCATCTCCCACCTGTTCTCACTAAGTCCTCAGAGAAAAGCAGTGATGAAGATTCACAAAATGGGGAAATTGATGTTGATAGAATTTTCCGGGACAATATTGGAAAACCAAGTGAAGATCCAGCACTGATTTTGTACACAAGTGGGACAACAGGTAAACCTAAAGGAGTGGTTCATACTCACAGAAGCATTGCTGCCCAGGTCCAAACCTTGGCAAATGCATGGGAGTATACATCTGCTGATAAGTTTCTACACTGCCTACCGTTGCATCATGTTCATGGACTTTTCAATGCTTTATTTGCCCCTCTCTATGCAGGATCCTCGGTTGAATTTATGCCAAAATTTAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAGTCATATCCATCCGAAGGATCTAAGGTTGATGATGCTATAACTGTTTTCACTGGAGTTCCAACTATGTACACCCGGTTGATACAAGGTTATCATGCAATGGATCCTGAGCTACAAGCCACCTCAGCATCTGCTGCACGGAACTTGCGTCTTATGATGTGTGGGTCCTCTGCACTCCCTCAACCTGTTATGCAAGAATGGGAAGCCATCACCGGGCATCGCTTATTGGAGCGATATGGCATGACTGAATTTGTCATGGCATTGTCAAATCCTTTGAAAGGAGAGCGTAAACCGGGCACTGTTGGCAAACCATTTCCTGGTATAGAGGTCAAGATTCTTTCAGATGAGGACAGTGGGAAAGAAGAGACTAAAGTGGGGGAGCTTTGTGTTAAAAGCCCTTCATCTTTTAAAGAATATTGGAAACTTCCGGAGATAACGAAAGAATCATTTACTGAAGATGGATTCTTTAAGACTGGGGATGCAGTTACTACGGATAAAGATGGATACTACATCATTCTAGGACGTACTAATGCTGATATAATCAAGGCTGGTGGCTACAAACTATCTGCCTTAGAAATTGAATCAGTTATACTAGAGCATCAAGCTGTCGCGGAATGCTGCGTTTTGGGTTTACCTGACAAAGATTACGGGGAAGTTGTCGGTGCGATTATTGTACCAGAGGCTGATGTCAAGAGAAAGCGAGATGAAGAATCAAAGCCTGTTCTAAGCCTGGAAGAGTTATCCAGCTGGGCCAAACCCAAAATTGCACCTTACAAGATACCAACAAAACTTTTTGTTTGGGACTCACTCCCTCGCAATGCAATGGGGAAGGTAAATAAAAAAGAGCTGAAGAAAATGCTAGCTTCGGAACACTAA 1632 0.4295 MEVFKAVAKNELATHGSVAIRADQKSYSYRQLILSAEKISNILCGSDVKTGNLSGARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEPELLHVINNSDVSTILSTEDHSELMQNLANKTSSQFFHLPPVLTKSSEKSSDEDSQNGEIDVDRIFRDNIGKPSEDPALILYTSGTTGKPKGVVHTHRSIAAQVQTLANAWEYTSADKFLHCLPLHHVHGLFNALFAPLYAGSSVEFMPKFSVRGIWQRWRESYPSEGSKVDDAITVFTGVPTMYTRLIQGYHAMDPELQATSASAARNLRLMMCGSSALPQPVMQEWEAITGHRLLERYGMTEFVMALSNPLKGERKPGTVGKPFPGIEVKILSDEDSGKEETKVGELCVKSPSSFKEYWKLPEITKESFTEDGFFKTGDAVTTDKDGYYIILGRTNADIIKAGGYKLSALEIESVILEHQAVAECCVLGLPDKDYGEVVGAIIVPEADVKRKRDEESKPVLSLEELSSWAKPKIAPYKIPTKLFVWDSLPRNAMGKVNKKELKKMLASEH 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00392 543 Pfam AMP-binding enzyme 14 433 IPR000873 -
Aip09g00392 543 ProSitePatterns Putative AMP-binding domain signature. 171 182 IPR020845 -
Aip09g00392 543 Gene3D - 430 543 IPR045851 -
Aip09g00392 543 Pfam AMP-binding enzyme C-terminal domain 444 529 IPR025110 -
Aip09g00392 543 SUPERFAMILY Acetyl-CoA synthetase-like 13 541 - -
Aip09g00392 543 PANTHER ACYL-COA SYNTHETASE 1 541 - -
Aip09g00392 543 PRINTS AMP-binding signature 166 177 IPR020459 -
Aip09g00392 543 PRINTS AMP-binding signature 178 186 IPR020459 -
Aip09g00392 543 PANTHER MALONATE--COA LIGASE-LIKE 1 541 - -
Aip09g00392 543 CDD MCS 17 537 - -
Aip09g00392 543 Gene3D - 4 427 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00392 Aip-Chr9 3938805 3946395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00392 166 541 Monolignol Biosynthesis Gene Families AT4G19010 28.535 9.08e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00392 K18660 - gmx:100813324 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00392 09 3938805 3946395 Aip09g00392 09 3938805 3946395 ECH