LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip09g00390	ATGGCGGAGGCCTTGCTTGGAATTGTGCTGGATAACTTGATCCCTTTGGTCCAGAGTGAATTTGCAGCCTTTTTTGGAATCAAGGAAAAGGCTGAAGAGCTGTCACGCACTTTAGAACTCATCAAAGctgttcttgatgatgccgagcagaaacaatGGTCTAATCGTCCTCTGAAGGTGTGGCTGCAGCAGCTTAAAGATGCAATGTATGTGCTGGATGATATCCTTGATCAGTTGCCTACTCAATCCTCTCAACTTGGGTGCTTAACTTCTTTGAACCCAAAGAAGGTGATGCATCGTCGTGAACTTGGACAGAAGTTGAATGAGATAATAGGGAGGTTGGATCGAATTGCTCAAGCTAGGACCAACTTTGATCTTAGACAAGGTGTGAGGGAGAGGCCAAGTGAAGTAGTTGAATGGCGCCAAACTAGCTCAACTATCGCCGTTCCTCAAGTGTACGGACGAGATGAAGATAAAGGGAGAGTTGTGGAGTTTCTTCTTAGCCCATCACGAAGCTCCGAGTTCCTTtccgtctatcccattgttggctttggtggtctcgggaaaacaacacttgttcagctggtctacaacgatccagaagtaggtaacaattttgatttgaagatttgggtgtgtgtttctgagaatttcactgtCAAGAGTATTTTGTGTTCCATTGTAGAAGCTATCACAAATGTTAAGTCTGAGGGTATGGCTTTAGATGTAATGGAGAAAAAAGTGAAAGAATTGCTACAAAGTAAAAAGTATTTACTGGTTTTGGATGATGTATGGAAAAGAAGCCAAGAAATGGAATTGGGATTAACCCAAGACAAATGGGATAAATTAAGATCCGTGTTGTCTTGTGGATCTAAAGGCTCCTCCATTTTAGTATCCACTCGTGATAAGCATGTTGCAACAATTATGGGAACATGCCAAGCTCATTATTTGGACCGTCtatccgatgatgattgttggtccttgtttaaactgcgcgcatttggagctgacagagaagagcgtgcagagcttgtagcaatagggaaggagatagtcaggaaatgtggaggatcacctcttgcagcactggcattaggaggtttgatgcaatccagaagcacggaaaaggaatgggttgaagttcagaaaagtgagatttggagtttaccagatgagaatgatattatgcgtgtcttgagattaagctactcttgtttagcgccaactctaaagcagtgttttgctttctgtgccatatttccaaaagatatggaaatggtgaagcaagaattgatttatctttggatgggtaatggatttatttcatcccggccaaacttggaggtggaggatgttggcaacatggtttggaatgaattatatggaaagtcattcttccaagatgtcagggttgatgacttttctggcaagatttatttcaagatgcatgatttagtccatgatcttgcTCAATCAATTTCAGAGCAAGAGTGTATATGCTTGGAGAAACAAAACCTTAATGATTCTTCAAGAAACCCCCATCATATTGTTTTTCACGACATTGATAAAAGGCAATTCAAGAAGAGATCCGTTGAGAAAGCTGAATCCTTGCGGACATTGTATCAATTGAATTCATATGGATTTCCTTTCAGTTCTAGATTGATTCGAACAAATAATTCTCTTCGGGTTTTGTGCATATATGGTAGAAAGATACCATCTTTTGGGAGTTTAACTTGCTTGAGGTATTTGGAACTTAGTGATTTGAATATAAAGTGCTTGCCTGCTAGTATTTGCAATTTGGGTAGATTGGAAATCTTGAAACTAAGACAATTGTGGAGGCTTCGCTGTCTACCGAAACACTTGACGAGGATGCAAAATCTCCGACATCTTATCATTGATCATTGTGAGTCACTATCTGAAATGTGTCCAAACATTCACAAACTGTGTGAATTGAGAATGCTAAGTGCATACATTGTGAAATCAGAGAAAGGGTATAGTTTGGCAGAATTACGTCATTTGAATCTGGGAGGAAAGCTAAGCATCAAAGGCCTGGGAAATGTCAGCAGTGTATCTGAAGCTGAAGATGCCAATTTGAAGGGTAAACGAGACCTCACAGAATTGAGCTTGTCATGGTTCAGCATTAATAAGACGAAGTCGGTTGTCGGAGAAGAAGAAGTACTTGAAGCGCTTCAACCTCACTCCACACTCAAGCTGTTGACGATAAGTGAGTATGAGGGATTACAATGGCCAACTTGGATGCAAAACAATTCTGCTACCCACAATTTAGTTTCTCTTCGACTTATGGATTGTGGAAAGTGCGGGCATCTTCCTCCAGTGGGAAAACTTCCATTTCTGAAGGAGCTTCTGGTAAGATGCATGGATGAACTGCAGTACATTGAGGAAGATGAAAGTTATGATGGTGTTGAAGCAATGCCATTCCCATCTTTGGAGGAATTGGGTTTGTCCTACTTGCCAAACGTGGAGAGGTTGATGAAACGGGAAACAACACACATGTTCCCCTCTCTTTCTAAACTGTATATCTGTAAATGCCCTAAACTGCAATTGCCGTGTCTTCCACATGTTAAAATACTCGATGTTATGGAATGTAGCAATGAGCAACTGAAGTCAATCTCTAATCTCAACAGTCTTAATGAACTATATCTTAATCTAAATGATGAAGTGTCGTGCTTCCCAGAAGGAATGCTGAACAACATGACCTCTCTTGCAACTCTGGAAATAAAATATTTCAACTGTCGTAAGCTGGAGTGTTTACCAGAACAGGGTTGGAAAGGCTTATCTTCACTTCGAAAACTGTCAATTTTTGGCTGTCATAGTTTGGCATCCTTGCCTGAAGGTGTACGGCATCTTACTTCACTTCAATCTTTGACTATTGGAGGCTGCCCAGCATTGAGGGAGCGGTGCAAGGAAGGAACAGGGGAGGACTGGCACAAGATTGCTCATATTCCCAAAGTATACTTGGGAGACTCAGACTCAGACTT	2999	0.3208	MAEALLGIVLDNLIPLVQSEFAAFFGIKEKAEELSRTLELIKAVLDDAEQKQWSNRPLKVWLQQLKDAMYVLDDILDQLPTQSSQLGCLTSLNPKKVMHRRELGQKLNEIIGRLDRIAQARTNFDLRQGVRERPSEVVEWRQTSSTIAVPQVYGRDEDKGRVVEFLLSPSRSSEFLSVYPIVGFGGLGKTTLVQLVYNDPEVGNNFDLKIWVCVSENFTVKSILCSIVEAITNVKSEGMALDVMEKKVKELLQSKKYLLVLDDVWKRSQEMELGLTQDKWDKLRSVLSCGSKGSSILVSTRDKHVATIMGTCQAHYLDRLSDDDCWSLFKLRAFGADREERAELVAIGKEIVRKCGGSPLAALALGGLMQSRSTEKEWVEVQKSEIWSLPDENDIMRVLRLSYSCLAPTLKQCFAFCAIFPKDMEMVKQELIYLWMGNGFISSRPNLEVEDVGNMVWNELYGKSFFQDVRVDDFSGKIYFKMHDLVHDLAQSISEQECICLEKQNLNDSSRNPHHIVFHDIDKRQFKKRSVEKAESLRTLYQLNSYGFPFSSRLIRTNNSLRVLCIYGRKIPSFGSLTCLRYLELSDLNIKCLPASICNLGRLEILKLRQLWRLRCLPKHLTRMQNLRHLIIDHCESLSEMCPNIHKLCELRMLSAYIVKSEKGYSLAELRHLNLGGKLSIKGLGNVSSVSEAEDANLKGKRDLTELSLSWFSINKTKSVVGEEEVLEALQPHSTLKLLTISEYEGLQWPTWMQNNSATHNLVSLRLMDCGKCGHLPPVGKLPFLKELLVRCMDELQYIEEDESYDGVEAMPFPSLEELGLSYLPNVERLMKRETTHMFPSLSKLYICKCPKLQLPCLPHVKILDVMECSNEQLKSISNLNSLNELYLNLNDEVSCFPEGMLNNMTSLATLEIKYFNCRKLECLPEQGWKGLSSLRKLSIFGCHSLASLPEGVRHLTSLQSLTIGGCPALRERCKEGTGEDWHKIAHIPKVYLGDSDSD	999

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip09g00390	999	PANTHER	OS05G0414200 PROTEIN	30	951	-	-
	Aip09g00390	999	Gene3D	-	403	493	IPR036388	-
	Aip09g00390	999	Gene3D	Ribonuclease Inhibitor	662	856	IPR032675	-
	Aip09g00390	999	Gene3D	Ribonuclease Inhibitor	857	978	IPR032675	-
	Aip09g00390	999	Gene3D	Ribonuclease Inhibitor	498	661	IPR032675	-
	Aip09g00390	999	Gene3D	-	319	402	IPR042197	-
	Aip09g00390	999	PANTHER	DISEASE RESISTANCE PROTEIN RP	30	951	IPR044974	GO:0006952
	Aip09g00390	999	PRINTS	Disease resistance protein signature	954	970	-	-
	Aip09g00390	999	PRINTS	Disease resistance protein signature	178	193	-	-
	Aip09g00390	999	PRINTS	Disease resistance protein signature	251	265	-	-
	Aip09g00390	999	PRINTS	Disease resistance protein signature	355	369	-	-
	Aip09g00390	999	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	140	417	IPR027417	-
	Aip09g00390	999	Pfam	NB-ARC domain	156	403	IPR002182	GO:0043531
	Aip09g00390	999	Coils	Coil	31	51	-	-
	Aip09g00390	999	CDD	RX-CC_like	2	118	IPR038005	-
	Aip09g00390	999	Pfam	Rx N-terminal domain	6	86	IPR041118	-
	Aip09g00390	999	Gene3D	-	6	120	-	-
	Aip09g00390	999	Gene3D	-	139	315	IPR027417	-
	Aip09g00390	999	SUPERFAMILY	L domain-like	466	986	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip09g00390	Aip-Chr9	3907319	3928535	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip09g00390	181	800	WRKY Transcription Factor Family	AT5G45050	22.961	1.76e-07	53.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip09g00390	-		-	ahf:112709874	1525.38