Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00378 ATGCCATTGACTCCGGCGGATTCCGGTGGGTTGGCGAAGGGGACATTGACCGGAATCATAATAGGGGCGGTTTTGGGTTCGACGGCGATGCTTATCATTGGGGGCATTTTCGTCTTTTTCTACAGGAGGGCGAAGAGGAAGAGGAATCAGGGTTTTGAGAAGAGCAACTACTATGGTGCTCCTCCTCAACCAAAAGTTGACCAGGGTAGTGGCTTACCTCAGCAATGGCAAAGTACTCCTTCTCCTTCTACAGATGGTAAAGGAGGGTTGCCTCCGAAACCCCCTGGGGTTGTGGCAAATCACCAAAAGTCGTCATCTGCTGGTAGTCTTCCCACATATTCTTCAGCTACCAGCAGTGGTATTGGGTCTGAGCGGCCATACATGTCTCAGTCTTCTGGCATGTCCTTGTCTCTATCTCAGAGTACTTTTACATATGATGAGTTAGCAATGGCAACAGAAGGGTTCTCCGGCTCAAATCTTCTTGGTCAAGGTGGTTTTGGCTATGTCCACAAAGGAGTTCTTCCAAATGGAAAAACTGTTGCTGTTAAGCAGCTGAAATCCGAGAGTAAACAGGGGGAGCGTGAGTTTCATGCAGAAGTCGATGTCATTAGCCGTGTCCATCACAGGCATCTTGTTTCCCTAGTTGGATATTGCGTCTCAGGTGGCCAAAGGATGCTTGTTTATGAGTTTGTGCCAAATAAAACACTTGAGTTTCATTTGCATGCAAAGGACAGACCGACTATGGACTGGTCAACGAGGATGAAGATTGCAGTTGGAGCTGCAAAGGGATTGGCATACCTGCATGAGGATTGTCACCCTAAAATCATACATCGGGACATTAAAGCATCTAACATCCTTATTGATGATAGTTTTGAGGCAAAGGTTGCAGATTTTGGACTAGCCAAATTTTCAACAGACACAGATACCCATGTCTCTACTCGAGTGATGGGAACCTTTGGATACCTGGCTCCTGAATATGCTGCTAGTGGGAAACTCACAGAGAAGTCAGATGTTTTCTCCTATGGTGTTGTGCTTTTGGAGTTGATTACCGGTCGAAAACCTGTTGATAAAACTGAATCTTTCACAGATGACAGCATGGTTGAATGGGCAAGGCCCTTACTTTCCCAAGCTTTGGAAATTGGAAATTTTAGTGGACTTCTAGATCCAAGGTTGCAGACAAATTATGATCGTGAAGAGCTGACTCGAATGACTGCATGTGCCGCAACATGTGTGCGCCATTCAGCCAGGCGCCGGCCTCGAATGAGCCAGGTTGTTCGAGCTCTAGAAGGACATATTTCTCTAGAGGATCTATACGAGGGGGGCACACCGGGGCACAGCAGAGTTTTTGGTTCCTTTGAGAGTTTAAACTATGACGCCGGTCAATACAATGAAGACCTAAAGAAGTTCAGGAAGCTGGCACTTGAAAGCCAAGAACATGGCACTAGTGAGTACAGTGGACCGAGCAGTGAATACGGTCAACATCCATCTGCCTCAACCAGTTCAGGCCTGCAAAACACACAAGAGACGGAAAGGATTTAA 1539 0.4678 MPLTPADSGGLAKGTLTGIIIGAVLGSTAMLIIGGIFVFFYRRAKRKRNQGFEKSNYYGAPPQPKVDQGSGLPQQWQSTPSPSTDGKGGLPPKPPGVVANHQKSSSAGSLPTYSSATSSGIGSERPYMSQSSGMSLSLSQSTFTYDELAMATEGFSGSNLLGQGGFGYVHKGVLPNGKTVAVKQLKSESKQGEREFHAEVDVISRVHHRHLVSLVGYCVSGGQRMLVYEFVPNKTLEFHLHAKDRPTMDWSTRMKIAVGAAKGLAYLHEDCHPKIIHRDIKASNILIDDSFEAKVADFGLAKFSTDTDTHVSTRVMGTFGYLAPEYAASGKLTEKSDVFSYGVVLLELITGRKPVDKTESFTDDSMVEWARPLLSQALEIGNFSGLLDPRLQTNYDREELTRMTACAATCVRHSARRRPRMSQVVRALEGHISLEDLYEGGTPGHSRVFGSFESLNYDAGQYNEDLKKFRKLALESQEHGTSEYSGPSSEYGQHPSASTSSGLQNTQETERI 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00378 512 Gene3D Transferase(Phosphotransferase) domain 1 231 437 - -
Aip09g00378 512 ProSitePatterns Protein kinases ATP-binding region signature. 161 183 IPR017441 GO:0005524
Aip09g00378 512 Gene3D Phosphorylase Kinase; domain 1 118 230 - -
Aip09g00378 512 MobiDBLite consensus disorder prediction 478 512 - -
Aip09g00378 512 MobiDBLite consensus disorder prediction 68 85 - -
Aip09g00378 512 ProSiteProfiles Protein kinase domain profile. 155 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g00378 512 Pfam Protein tyrosine and serine/threonine kinase 159 428 IPR001245 GO:0004672|GO:0006468
Aip09g00378 512 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 17 499 - -
Aip09g00378 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
Aip09g00378 512 SUPERFAMILY Protein kinase-like (PK-like) 127 428 IPR011009 -
Aip09g00378 512 SMART serkin_6 155 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g00378 512 MobiDBLite consensus disorder prediction 52 133 - -
Aip09g00378 512 MobiDBLite consensus disorder prediction 473 512 - -
Aip09g00378 512 MobiDBLite consensus disorder prediction 99 133 - -
Aip09g00378 512 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 17 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00378 Aip-Chr9 3797510 3802010 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00378 5 474 Trihelix Transcription Factor Family AT1G70460 52.442 1.85e-159 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Aip09g00378 PK_Tyr_Ser-Thr 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00378 - - aip:107617256 1013.83