LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip09g00377	ATGCCATTGACTCCGGCGGATTCCGGTGGGTTGGCGAAGGGGACATTGACCGGAATCATAGGAATCATAATTTTGGGTTCGACGGCGATGCTTATCATTGGGGGCATTTTCGTCTTTTTCTACAGGAGGGCGAAGAGGAAGAGGAATCAGGGTTTTGAGAAGAGCAACTACTATGGTGCTCCTCCTCAACCAAAAGTTGACCAGGGTAGTGGCTTACCTCAGCAATGGCAAAGTACTCCTTCTCCTTCTACAGATGGTAAAGGAGGGTTGCCTCCGAAACCCCCTGGGGTTGTGGCAAATCACCAAAAGTCGTCATCTGCTGGTAGTCTTCCCACATATTCTTCAGCTACCAGCAGTGGTATTGGGTCTGAGCGGCCATACATGTCTCAGTCTTCTGGCATGTCCTTGTCTCTATCTCAGAGTACTTTTACATATGATGAGTTAGCAATGGCAACAGAAGGGTTCTCCGGCTCAAATCTTCTTGGTCAAGGTGGTTTTGGCTATGTCCACAAAGGAGTTCTTCCAAATGGAAAAACTGTTGCTGTTAAGCAGCTGAAATCCGAGAGTAAACAGGGGGAGCGTGAGTTTCATGCAGAAGTCGATGTCATTAGCCGTGTCCATCACAGGCATCTTGTTTCCCTAGTTGGATATTGCGTCTCAGGTGGCCAAAGGATGCTTGTTTATGAGTTTGTGCCAAATAAAACACTTGAGTTTCATTTGCATGCAAAGGACAGACCGACTATGGACTGGTCAACGAGGATGAAGATTGCAGTTGGAGCTGCAAAGGGATTGGCATACCTGCATGAGGATTGTCACCCTAAAATCATACATCGGGACATTAAAGCATCTAACATCCTTATTGATGATAGTTTTGAGGCAAAGGTTGCAGATTTTGGACTAGCCAAATTTTCAACAGACACAGATACCCATGTCTCTACTCGAGTGATGGGAACCTTTGGATACCTGGCTCCTGAATATGCTGCTAGTGGGAAACTCACAGAGAAGTCAGATGTTTTCTCCTATGGTGTTGTGCTTTTGGAGTTGATTACCGGTCGAAAACCTGTTGATAAAACTGAATCTTTCACAGATGACAGCATGGTTGAATGGGCAAGGCCCTTACTTTCCCAAGCTTTGGAAATTGGAAATTTTAGTGGACTTCTAGATCCAAGGTTGCAGACAAATTATGATCGTGAAGAGCTGACTCGAATGACTGCATGTGCCGCAACATGTGTGCGCCATTCAGCCAGGCGCCGGCCTCGAATGAGCCAGGTTGTTCGAGCTCTAGAAGGACATATTTCTCTAGAGGATCTATACGAGGGGGGCACACCGGGGCACAGCAGAGTTTTTGGTTCCTTTGAGAGTTTAAACTATGACGCCGGTCAATACAATGAAGACCTAAAGAAGTTCAGGAAGCTGGCACTTGAAAGCCAAGAACATGGCACTAGTGAGTACAGTGGACCGAGCAGTGAATACGGTCAACATCCATCTGCCTCAACCAGTTCAGGCCTGCAAAACACACAAGAGACGGAAAGGATTTAA	1539	0.4652	MPLTPADSGGLAKGTLTGIIGIIILGSTAMLIIGGIFVFFYRRAKRKRNQGFEKSNYYGAPPQPKVDQGSGLPQQWQSTPSPSTDGKGGLPPKPPGVVANHQKSSSAGSLPTYSSATSSGIGSERPYMSQSSGMSLSLSQSTFTYDELAMATEGFSGSNLLGQGGFGYVHKGVLPNGKTVAVKQLKSESKQGEREFHAEVDVISRVHHRHLVSLVGYCVSGGQRMLVYEFVPNKTLEFHLHAKDRPTMDWSTRMKIAVGAAKGLAYLHEDCHPKIIHRDIKASNILIDDSFEAKVADFGLAKFSTDTDTHVSTRVMGTFGYLAPEYAASGKLTEKSDVFSYGVVLLELITGRKPVDKTESFTDDSMVEWARPLLSQALEIGNFSGLLDPRLQTNYDREELTRMTACAATCVRHSARRRPRMSQVVRALEGHISLEDLYEGGTPGHSRVFGSFESLNYDAGQYNEDLKKFRKLALESQEHGTSEYSGPSSEYGQHPSASTSSGLQNTQETERI	512

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aip09g00377	512	Gene3D	Transferase(Phosphotransferase) domain 1	231	437	-	-
Aip09g00377	512	ProSitePatterns	Protein kinases ATP-binding region signature.	161	183	IPR017441	GO:0005524
Aip09g00377	512	MobiDBLite	consensus disorder prediction	478	512	-	-
Aip09g00377	512	MobiDBLite	consensus disorder prediction	68	85	-	-
Aip09g00377	512	ProSiteProfiles	Protein kinase domain profile.	155	434	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Aip09g00377	512	Pfam	Protein tyrosine and serine/threonine kinase	159	428	IPR001245	GO:0004672\|GO:0006468
Aip09g00377	512	Gene3D	Phosphorylase Kinase; domain 1	118	230	-	-
Aip09g00377	512	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	13	499	-	-
Aip09g00377	512	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	275	287	IPR008271	GO:0004672\|GO:0006468
Aip09g00377	512	SUPERFAMILY	Protein kinase-like (PK-like)	127	428	IPR011009	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip09g00377	Aip-Chr9	3791655	3795735	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip09g00377	5	474	Trihelix Transcription Factor Family	AT1G70460	51.915	3.15e-159	468

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Aip09g00377		PK_Tyr_Ser-Thr	1.3e-48	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip09g00377	-		-	aip:107617256	982.245

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip09g00377	09	3791655	3795735	Aip09g00377	09	3791655	3795735	ECH

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