Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00330 ATGGTAAGGTACGTTTCTTCACAGGTTCATCGCGTTAAAATTCCTTGTCCGATTTGCATGGACTGTTATTTGAATATGGAGGATTGCCGCAATATTCTTCCAAAGAAGGTTTTCGATCTGTGGGAAAAATTATTGTGCGAAGCCGGGATACCTGAGACTGACAAATTCTATTGTCCCTTTAAGGACTGTTCTGCGCTCATGATCGATGACGGTGACCACAATGGCAGAAAATTGGCCAGAAAATTTAAGTGTCCTCATTGTGATAGAATGTTTTGTGCAGAGTGCAAGGTTGCTTGGCACCATGGAATCAGGTGCAAGGAGTTTCAGAGTCGTAACAAAGACAGGATGGAGAAGGAGGATGTTATGCTGATGGGGTTGGCGAAGAAACAGAGTTGGCAGAGGTGCCCTAATTGCAACTTCTACGTTGAGAAAAGTGATGGGTGCCCATCCATGATATGTAGAATCTGCACCGAGACCAAAACAAAAAAGGAATCTTTTACCACAATCAGTTGCAACCACTCATTCTGTACAACTTGCATGGTAAAGCACGTTTCCTCAGAGGTTCATCGCGTTAAAATTCCTTGTCCGATTTGCATGGACCGTGATTTGAATGTGGAGGATTGCCGCAATATTCTTCCAAAGAAGGTTTTCGATCTGTGGGGAAAATTATTGTGTGAAGCCGGGATACCTGAGGATGACAAATTCTATTGTCCCTTTAAGGACTGTTCTGCGCTCATGATCGATGATGGTGTGTGCAGAAAATTGGCAAGAAAATTTAAGTGTCCTCATTGTGATAGAATGTTTTGTGCAGAGTGCAAGGTTGCTTGGCACCATGGAATCAGGTGCAAGAAGTTTCAGAGTCGTAACAAAGACAGGATGGAAAAGGAGGATGTTATGCTGATGGAATTGGCGAAGAAAATGCAATGGCAGAGGTGCCCTAATTGCAAATTCTATGTTGAGAAAACTGGTGGGTGCAGTCACATGATGTGTAGGTGTGGAGAGACTTTCCTTTACTTATTAGGATGTGGAATTGAATAG 1038 0.4297 MVRYVSSQVHRVKIPCPICMDCYLNMEDCRNILPKKVFDLWEKLLCEAGIPETDKFYCPFKDCSALMIDDGDHNGRKLARKFKCPHCDRMFCAECKVAWHHGIRCKEFQSRNKDRMEKEDVMLMGLAKKQSWQRCPNCNFYVEKSDGCPSMICRICTETKTKKESFTTISCNHSFCTTCMVKHVSSEVHRVKIPCPICMDRDLNVEDCRNILPKKVFDLWGKLLCEAGIPEDDKFYCPFKDCSALMIDDGVCRKLARKFKCPHCDRMFCAECKVAWHHGIRCKKFQSRNKDRMEKEDVMLMELAKKMQWQRCPNCKFYVEKTGGCSHMMCRCGETFLYLLGCGIE 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00330 345 ProSitePatterns Zinc finger RING-type signature. 171 180 IPR017907 -
Aip09g00330 345 Pfam Zinc finger, C3HC4 type (RING finger) 153 198 IPR018957 GO:0046872
Aip09g00330 345 SMART ibrneu5 218 282 IPR002867 -
Aip09g00330 345 SMART ibrneu5 39 105 IPR002867 -
Aip09g00330 345 ProSiteProfiles Zinc finger RING-type profile. 153 198 IPR001841 -
Aip09g00330 345 Pfam IBR domain, a half RING-finger domain 233 282 IPR002867 -
Aip09g00330 345 Pfam IBR domain, a half RING-finger domain 52 105 IPR002867 -
Aip09g00330 345 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 1 153 IPR031127 GO:0004842|GO:0016567
Aip09g00330 345 SUPERFAMILY RING/U-box 296 336 - -
Aip09g00330 345 ProSiteProfiles TRIAD supradomain profile. 1 153 IPR044066 -
Aip09g00330 345 SUPERFAMILY RING/U-box 150 227 - -
Aip09g00330 345 SMART ring_2 249 315 IPR001841 -
Aip09g00330 345 SMART ring_2 153 198 IPR001841 -
Aip09g00330 345 Gene3D - 280 343 - -
Aip09g00330 345 SUPERFAMILY RING/U-box 231 286 - -
Aip09g00330 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 231 IPR013083 -
Aip09g00330 345 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 1 153 - -
Aip09g00330 345 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 151 340 - -
Aip09g00330 345 SUPERFAMILY RING/U-box 51 110 - -
Aip09g00330 345 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 151 340 IPR031127 GO:0004842|GO:0016567
Aip09g00330 345 ProSiteProfiles TRIAD supradomain profile. 149 345 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00330 Aip-Chr9 3139661 3142535 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00330 153 341 C3H Transcription Factor Family AT2G19610 31.343 2.00e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00330 K11975 - egr:104437955 305.834