Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00329 ATGGTAAGGTACGTTTCTTCACAGGTTCATCGCGTTAAAATTCCTTGTCCGATTTGCATGGACTGTTATTTGAATATGGAGGATTGCCGCAATATTCTTCCAAAGAAGGTTTTCGATCTGTGGGGAAAATTATTGTGTGAAGCAGCGATACCTGAGGCTGACAAATTCTATTGTCCCTTTAAGAACTGTTCTGCGCTCATGATCGATGACGGTGAGTGCAGAAAATTGGCCAAAAAATTTAAATGTCCTCATTGTGATGGAATGTTTTGTGCACAGTGCAAGGTTGCTTGGCACCATGGAATCAGGTGCAAGGAGTTTCAGGGCAGTAATGGGGATGTTATGATGATGGGGTTGGCGAAGGAGAAGAGTTGGCAGAGGTGTCCTAATTGCAAGTTATACGTTGAGAAAAATGGTGGGTGCAAATCCATGTTTTGTAGGTGTGGAGAGAATTTCTGTTACATATGTGGAATTAGTCTTCGTCCCCATAATAAATGCTCTTGTAGAAGTGAATAG 513 0.4191 MVRYVSSQVHRVKIPCPICMDCYLNMEDCRNILPKKVFDLWGKLLCEAAIPEADKFYCPFKNCSALMIDDGECRKLAKKFKCPHCDGMFCAQCKVAWHHGIRCKEFQGSNGDVMMMGLAKEKSWQRCPNCKLYVEKNGGCKSMFCRCGENFCYICGISLRPHNKCSCRSE 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00329 170 SMART ibrneu5 39 103 IPR002867 -
Aip09g00329 170 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 1 168 - -
Aip09g00329 170 Gene3D - 100 170 - -
Aip09g00329 170 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 1 168 IPR031127 GO:0004842|GO:0016567
Aip09g00329 170 ProSiteProfiles TRIAD supradomain profile. 1 170 IPR044066 -
Aip09g00329 170 Pfam IBR domain, a half RING-finger domain 119 167 IPR002867 -
Aip09g00329 170 Pfam IBR domain, a half RING-finger domain 53 103 IPR002867 -
Aip09g00329 170 SUPERFAMILY RING/U-box 44 107 - -
Aip09g00329 170 SUPERFAMILY RING/U-box 113 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00329 Aip-Chr9 3136756 3137268 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00329 15 156 C3H Transcription Factor Family AT2G19610 34.839 4.94e-20 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00329 K11975 - aip:107614633 254.218