Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00317 ATGGATGGAACTGAGGATGATGATCTAAGGTATCCCTCTAACCCATATGGTGTTAATCACCAGGGTTATGGCTATCTGAGTCATAGGAGACTTCCGGTTCGGACTTCACAGTATATTCAGCCAGTTGCAAATGATTTTGTGGAACATAATGACAATGCCAATGATAATGAGGAGGAGAAGGAGGATGAAGAAGATGAAGATGAAGAACAGATAATAGAAGAAGATCATGATGATGGTGATGATGTTGATTCCCAAAGGAATGCTGTCCCCAACAATGTTGAGGAAGGTGATGATGAAGACAGGGATGGGGATGAAATTGGTGGTAACAATGATGATGGCGAGGAGGAGGATGATGAGGAGGATGAGGAAGATGATGATGATGCTAAGCCGAAAATATATAGCATGAAGGTTGATGATGATATGGAGTGGCACCCGAAAAAGCGAAAGCTGAAGAGTTTGATTTCAGCTTATGAATTTGCACCCCGGGTACCAGCGCCATCGGCTGCGGCTCCTTCAACCCCTAAACCATCTTCTGGTGGTAGGAACTCCCTTACTGATTGGACCGAGCGCGAGACTTTCGTTCTTCTTGATGCTTGGGGTGATAAGTTTCTTCAACATGGGAGGAAGAGTCTTCGGTCTGAGGAATGGCAAGAAGTTGGAGAGAAGGTATCAAAAGTTTCCAAGATTGAAAGGAAAGATGCTCAGTGTCGAAACCGGTTAGATACCTTGAAGAAGAAGTACAAGAAGGAGAAGGCTAAATCAGAGAAAATGGGTAGTGGAACTTGCAAGTGGGTTTATTTTCAGAGGATGGATAAGCTGATGTCCTCTCCAGCGCAGCAATCAGGTCTCTCATGCGGTTTGGACTCCGGAGAATATGTGTTTACGAATCCTCGAGTTTATTTGAACCGCGCAAATGGGTTTGATCAGATGAGGGATAGTCCTGGGAATTCTGAATCCTTTGGCGAACAAGGTTCAAATGGACATAAACATAAGAAAAGAAGGTATGCAAGGTACAGCGACTATGATGCATCCTCATTCAGATTGCTTGCCAATTCCATTCAGAAATTCGGCGAGATATATGAGAAGATTGAGAGCAGTAGAAGGCAGCAGATGGTGGAACTGGAAAAGATGAGGATGGAGTTCCATAAGGATCTTGAAACACAAAAGAGGCAGATCCTAGAGAGAATTCAGAGTGAAATTTCAAAACTACATCAGAGAGATGATGATGAGGAGGAGAATGATGACTAG 1248 0.4367 MDGTEDDDLRYPSNPYGVNHQGYGYLSHRRLPVRTSQYIQPVANDFVEHNDNANDNEEEKEDEEDEDEEQIIEEDHDDGDDVDSQRNAVPNNVEEGDDEDRDGDEIGGNNDDGEEEDDEEDEEDDDDAKPKIYSMKVDDDMEWHPKKRKLKSLISAYEFAPRVPAPSAAAPSTPKPSSGGRNSLTDWTERETFVLLDAWGDKFLQHGRKSLRSEEWQEVGEKVSKVSKIERKDAQCRNRLDTLKKKYKKEKAKSEKMGSGTCKWVYFQRMDKLMSSPAQQSGLSCGLDSGEYVFTNPRVYLNRANGFDQMRDSPGNSESFGEQGSNGHKHKKRRYARYSDYDASSFRLLANSIQKFGEIYEKIESSRRQQMVELEKMRMEFHKDLETQKRQILERIQSEISKLHQRDDDEEENDD 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00317 415 Coils Coil 226 246 - -
Aip09g00317 415 Coils Coil 46 74 - -
Aip09g00317 415 MobiDBLite consensus disorder prediction 55 80 - -
Aip09g00317 415 Pfam Myb/SANT-like DNA-binding domain 186 273 IPR044822 -
Aip09g00317 415 MobiDBLite consensus disorder prediction 128 144 - -
Aip09g00317 415 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 69 411 IPR044823 -
Aip09g00317 415 PANTHER OS01G0718900 PROTEIN 69 411 - -
Aip09g00317 415 MobiDBLite consensus disorder prediction 1 23 - -
Aip09g00317 415 MobiDBLite consensus disorder prediction 162 185 - -
Aip09g00317 415 Coils Coil 393 413 - -
Aip09g00317 415 Gene3D - 187 249 - -
Aip09g00317 415 MobiDBLite consensus disorder prediction 36 144 - -
Aip09g00317 415 MobiDBLite consensus disorder prediction 309 323 - -
Aip09g00317 415 MobiDBLite consensus disorder prediction 306 333 - -
Aip09g00317 415 MobiDBLite consensus disorder prediction 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00317 Aip-Chr9 3049808 3052057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00317 346 406 Trihelix Transcription Factor Family AT3G14180 47.541 1.04e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Aip09g00317 Myb_DNA-bind_4 9.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00317 - - tcc:18595893 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00317 09 3049808 3052057 Aip09g00317 09 3049808 3052057 ECH