Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00311 ATGCAGATCGAAGAAGAGGAACAGCCTCTAGAGAATGGGGAATCCTACCATGAGTTGGCCGAACAAAACGAAGAGGAATATACAGAGGAACAAAATGCAGAGGAAGGAAGCCAAGAGGAAGTTGTAGTGGATGCAGATTCTACCGATGGTGCAGTCCTCGTTAATGATATAGAGTTGGCCAACCATGATTCGAAATGGTTGTGTTGCATCCCCACAAGTTTTCCTGCCAAGATTGCTGTTTCCAACATTCAGAGCTCTTCCTCTTTTGGACATAGTTTTGAGTGTAAATCCTCGTTGCAAAGAGGAATGACATTCTCGAACATGTCTGTTGCATCGAGCCTACTCTCAAGTAGGGGTCATAATCCTCTATTTCGCACAATCCCTGTGTTACCGAAACGATGCAGGTCTACTACAACCGTTCAAGCATCAAAGGACGTCCCAACTAGTTGGCGTTATCCACAAATGACCAAGAAACCAAGATGGTGGTGGAGAACATTAGCGTGCCTCCCTTACCTCATGCCTCTCCACGAGACATGGATGTACGCTGAGACAGCATACAATCTTAACCCCTTTTTGGAATACTTTGAGTTCTTGACATACCCTTTTCTGGAGGCTATTGGCATGCTGCCTAGCTGGTTTCTCATGGCATACTTCTTCGTCGCCTACCTTGGAATCGTGAGGAGAAAAGAATGGCCTCACTTCTTCAGATTCCATGTTGTGATGGGAATGCTGTTGGAGATTGCATTGCAGGTTATAGGAACTGTGAGTCGCTGGATGCCGCTATCGGTTTACTGGGGTAAAATTGGAATGCATTTCTGGACCGGCGTATCATTTGCTTATCTCTTCACCGTCTTGGAGTCCATAAGGTGCGCCCTCGCCGGAATGTATGCCGATATCCCCTTTATATGCGATGCANNNNCATTGTCATTTTGTATTGTATCAGAGTTTGTTTTGAGAAGAACTGAAGAACTAGCTATCCGAATGTTACTGTTTATTACTTTATTTAGAAAAGATCCATATGCGCCACGAAGATGGGAACACCCAATGAAGGTTCCTGTGAAGGTTCCTACTTGTCTTGCATCACATCTGAAAGTGATTAAAATCAAAGAATATTTTGAATCCAGAGATGATAGAGATTTTTTCACCTATGTTCTTCAACATGGACTTGTTTTGGAGTCACTTGATATTCAGGTGGATCGTGGGAGAGCTAAAGGATTTGCAGAAGAATTATCCCTTTTGCCAAGGAGTTCTAAGGCGTGCCAAATTAACTTTTGCTGGAATCAGGAAAAGGAGGAGAAGGAGGCGTCACCACAAGAATCACAGCAATGGCAACATCTTCGAACACTACAAGAAAAAGCACTATTGGAACTGTTTAAAAAAAATAGAAATTTGTAA 1395 0.4308 MQIEEEEQPLENGESYHELAEQNEEEYTEEQNAEEGSQEEVVVDADSTDGAVLVNDIELANHDSKWLCCIPTSFPAKIAVSNIQSSSSFGHSFECKSSLQRGMTFSNMSVASSLLSSRGHNPLFRTIPVLPKRCRSTTTVQASKDVPTSWRYPQMTKKPRWWWRTLACLPYLMPLHETWMYAETAYNLNPFLEYFEFLTYPFLEAIGMLPSWFLMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLSVYWGKIGMHFWTGVSFAYLFTVLESIRCALAGMYADIPFICDAXXLSFCIVSEFVLRRTEELAIRMLLFITLFRKDPYAPRRWEHPMKVPVKVPTCLASHLKVIKIKEYFESRDDRDFFTYVLQHGLVLESLDIQVDRGRAKGFAEELSLLPRSSKACQINFCWNQEKEEKEASPQESQQWQHLRTLQEKALLELFKKNRNL 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00311 464 PANTHER PROTEIN TIC 20-II, CHLOROPLASTIC 81 308 IPR005691 -
Aip09g00311 464 PANTHER HIT-TYPE ZINC FINGER FAMILY PROTEIN-RELATED 81 308 - -
Aip09g00311 464 SMART 9598neu4hmm 357 425 IPR006566 -
Aip09g00311 464 Coils Coil 20 40 - -
Aip09g00311 464 MobiDBLite consensus disorder prediction 23 39 - -
Aip09g00311 464 MobiDBLite consensus disorder prediction 1 39 - -
Aip09g00311 464 TIGRFAM 3a0901s05TIC20: chloroplast protein import component, Tic20 family 70 308 IPR005691 -
Aip09g00311 464 Pfam FBD 353 394 IPR006566 -
Aip09g00311 464 Pfam Chloroplast import apparatus Tic20-like 133 305 IPR005691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00311 Aip-Chr9 2994533 3001045 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00311 98 308 Chloroplast and Mitochondria Gene Families AT4G03320 38.785 2.96e-45 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00311 - - adu:107464071 486.878