Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00292 ATGGATATCACCGACACGCAACGGAATAGTAACACTGAAAGTGATCTATGTCCATTGCTGATGGAGCAGCTGGTATCCCGCAATGATCATCAGCACATAATTGATATTGCAAGGAACAATGATGGGTTATCCAACTCATCTAATAATCAACGCCCTGCAGTGCATGAAAATCAACCTAGTGTCAGCACGGATGTCCATACCCGTGAAACAGCTTCATTTGCTTCACCTAGATTTAGTCCTAGAAGTTCCACATTGACAAGAGGAGAGGGGTACAATCATCGCAGAAGGAGCCCACTAAATTCTGGTCTATGGGTCTCTGTTGAGCTTTTTGTCACTGTGGGTCAGATCATAGCATCTGTTGTTGTCTTGTCAATGTCAAGTGATGAACATCCCCAAGCCCCATTGTTCGCATGGATTGTGGGTTATGCAGCTGGTTGTGTTGCTACTCTTCCTATTCTTTACTGGCGATATCAAAACTATAATCAAATTGCGGAACCAGATATATCTCAATCATCTCAAGGATCTTCTTTAAGTAACCCTTCAGAAACTACTTATACTGCCATATCTGTTACCCATAATTCGAACAGCGACAATAGTCACACTACAGAATTGTCTGCAGGAAGTGCTAGAATTCCTGGAGTGTTTAGTTCTAGGTTTAATGGATTAGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTCGTAGGCAATGTGTGGATCTTTGGAGGTCACACTTCTCCTTCCGATGCTCCAAAATTGTATAGAGGAGCCTCAATAGAATCCATTAACGCTCTGCCAATCTACAAGTTCAAATTGAAAAAAAATGAAAATAGTGGTGTTGAGGATGTCAATACCACTGCTGAAGATGACGGTGGAATTTTAGCTGCTGGGACTGAAAAGGAACGGCCTATATCAGGAGAAGATTCTGCTTGCTGCATTTGCTTGGCAAAATATGTAGACAACGACGAACTTCGGGAGCTACCATGCTTTCATATCTTTCATGTAGGATGTATTGATAAATGGTTAAAGATAAATGCATCCTGTCCTCTTTGTAAATATGAAGTTGGTACAAACAATGAAGGGGCACATTCGGCCATGGGTTCCAATCAGCATTAG 1131 0.4173 MDITDTQRNSNTESDLCPLLMEQLVSRNDHQHIIDIARNNDGLSNSSNNQRPAVHENQPSVSTDVHTRETASFASPRFSPRSSTLTRGEGYNHRRRSPLNSGLWVSVELFVTVGQIIASVVVLSMSSDEHPQAPLFAWIVGYAAGCVATLPILYWRYQNYNQIAEPDISQSSQGSSLSNPSETTYTAISVTHNSNSDNSHTTELSAGSARIPGVFSSRFNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPKLYRGASIESINALPIYKFKLKKNENSGVEDVNTTAEDDGGILAAGTEKERPISGEDSACCICLAKYVDNDELRELPCFHIFHVGCIDKWLKINASCPLCKYEVGTNNEGAHSAMGSNQH 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00292 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 366 IPR013083 -
Aip09g00292 376 ProSiteProfiles Zinc finger RING-type profile. 316 357 IPR001841 -
Aip09g00292 376 MobiDBLite consensus disorder prediction 39 94 - -
Aip09g00292 376 PANTHER PROTEIN, PUTATIVE-RELATED 260 370 - -
Aip09g00292 376 CDD RING-H2_RNF111_like 316 357 - -
Aip09g00292 376 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 260 - -
Aip09g00292 376 SUPERFAMILY RING/U-box 311 362 - -
Aip09g00292 376 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 260 370 - -
Aip09g00292 376 Pfam Ring finger domain 315 357 IPR001841 -
Aip09g00292 376 MobiDBLite consensus disorder prediction 39 87 - -
Aip09g00292 376 SMART ring_2 316 356 IPR001841 -
Aip09g00292 376 PANTHER PROTEIN, PUTATIVE-RELATED 1 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00292 Aip-Chr9 2835040 2837483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00292 1 361 C3H Transcription Factor Family AT1G80400 45.301 1.10e-117 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00292 - - aip:107614650 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00292 09 2835040 2837483 Aip09g00292 09 2835040 2837483 ECH