Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00283 ATGGCGAGAGAAAGTCTCGGATTTGAAATCACGGAGCTAAGGTTAGGTTTACCCGGCGAGCCTAAAAGTTTGGTGAGTACTAATAAGAATGAGAAGAAGAGAATGTTTTCGGAGATTGATGGCAATGGTGACAACGAGAAGAAGAGTAACACTGGAGGCAACCTGAAGACTACTGAGTCGAAGGCTCAGGTCGTAGGGTGGCCTCCAGTGTGCTCGTACCGGAAGAAGAACAGCATGAATGAGGCTACAAAGATGTATGTGAAGGTTAGCATGGATGGTGCTCCTTTCTTGAGGAAAATTGATTTGGGAATGCATAAGGGATACTCTGAGTTAGCCTTGGCCTTGGAGAAGCTCTTTGGTTGCTATGGAATGGGGGAAGCATTGAAGGATCCAGAGAACTGTGAACACGTTCCCATTTATGAGGACAAAGAGGGTGATTGGATGCTTGTTGGAGATGTTCCTTGGGAAATGTTTATGGAATCATGCAAGAGGCTTAGGATTATGAAGAGATCAGATGCGTGGCAAATTGAAAGGACATATATAGAGATAGATGAAATTAAGGAAAAAAATGTTTAG 576 0.4358 MARESLGFEITELRLGLPGEPKSLVSTNKNEKKRMFSEIDGNGDNEKKSNTGGNLKTTESKAQVVGWPPVCSYRKKNSMNEATKMYVKVSMDGAPFLRKIDLGMHKGYSELALALEKLFGCYGMGEALKDPENCEHVPIYEDKEGDWMLVGDVPWEMFMESCKRLRIMKRSDAWQIERTYIEIDEIKEKNV 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00283 191 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 4 172 - -
Aip09g00283 191 SUPERFAMILY CAD & PB1 domains 77 169 - -
Aip09g00283 191 ProSiteProfiles PB1 domain profile. 84 172 IPR000270 GO:0005515
Aip09g00283 191 Pfam AUX/IAA family 32 174 IPR033389 -
Aip09g00283 191 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 172 IPR003311 GO:0005634|GO:0006355
Aip09g00283 191 Gene3D - 78 181 - -
Aip09g00283 191 MobiDBLite consensus disorder prediction 26 45 - -
Aip09g00283 191 MobiDBLite consensus disorder prediction 18 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00283 Aip-Chr9 2677343 2682581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00283 21 176 B3 DNA Binding Superfamily AT5G20730 26.471 2.12e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aip09g00283 AUX_IAA 9.1e-45 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00283 K14484 - gmx:547784 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00283 09 2677343 2682581 Aip09g00283 09 2677343 2682581 ECH