Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00243 ATGTCTAAGCTCATCTTTTGCATTGCTCTGTTGGTATTGGTCCAAGCCATCATTTCAGTTGATGGCATTCTCCATCATTGGTATTCTGATGCCAATGCAACCTTCTATGGTGACATGGAAGGTAGAGAAACCATGGGGGGTGCATGTGGCTATGGTGATCTCTTTGAGCAAGGGTATGGTCTTATGACCACAGCTGTAAGCCCTGCCCTATTCAACAATGGTTACACATGTGGATCATGTTTTGAGATGAAATGTGTGAACAAGCCCAATTGGAATTATTGCAAAAAGGGCTCAAGCCCAATAAGAGTAACCGTAACAAACTTATGTCCACCAAATTATGGACAAGGTGATGGACATTGGTGCAACCCTCCATATAAACACTTTGATTTATCAATGAAGATGTTCACAACTATGGCAGAATATAGAGCAGGGATTGTACCTGTTTTATATAGAAGAGTTCCATGCCATAAACAAGGTGGTGTCAAGTTTCAGTTGAAAGGGACACCTTATTGGTTGCTTGTGTTGGTGTTCAATGTTGGTCATGTTGGTGATGTTTCTAGTGTTAGCATCAAAGGGCAAAATGAGGCAAAGAACAAAGATGAGCAGAGGAAGTCAGTTTACAGAGGCAAGTCGAAGTTCACAGAGGCAAAGAACAAAGATGAGCAGAGACGAGTTACTCACCGCGCGACGATGAAGACGATGGGACGGGCTACTGCCTGCTGGTGTTGA 729 0.4321 MSKLIFCIALLVLVQAIISVDGILHHWYSDANATFYGDMEGRETMGGACGYGDLFEQGYGLMTTAVSPALFNNGYTCGSCFEMKCVNKPNWNYCKKGSSPIRVTVTNLCPPNYGQGDGHWCNPPYKHFDLSMKMFTTMAEYRAGIVPVLYRRVPCHKQGGVKFQLKGTPYWLLVLVFNVGHVGDVSSVSIKGQNEAKNKDEQRKSVYRGKSKFTEAKNKDEQRRVTHRATMKTMGRATACWC 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00243 242 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Aip09g00243 242 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Aip09g00243 242 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Aip09g00243 242 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Aip09g00243 242 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Aip09g00243 242 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Aip09g00243 242 PANTHER EXPANSIN-A21-RELATED 10 195 - -
Aip09g00243 242 SMART dpbb_1 63 150 IPR007112 -
Aip09g00243 242 MobiDBLite consensus disorder prediction 194 223 - -
Aip09g00243 242 Pfam Lytic transglycolase 64 150 IPR009009 -
Aip09g00243 242 PANTHER EXPANSIN-A15 10 195 IPR002963 GO:0009664
Aip09g00243 242 Pfam Expansin C-terminal domain 161 201 IPR007117 -
Aip09g00243 242 SUPERFAMILY Barwin-like endoglucanases 7 178 IPR036908 -
Aip09g00243 242 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 160 IPR007112 -
Aip09g00243 242 MobiDBLite consensus disorder prediction 193 223 - -
Aip09g00243 242 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Aip09g00243 242 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Aip09g00243 242 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Aip09g00243 242 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Aip09g00243 242 Gene3D - 21 156 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00243 Aip-Chr9 2199805 2203864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00243 4 193 Expansin Gene Family AT5G39280 53.684 5.35e-73 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00243 - - tcc:18601628 258.455