Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00240 ATGCTGGAGCCTAAAAGGAGTGTGGAGCATCACAGGGTCATTTTCGTAATAACGGTGGTTGCTGGGTGCTATATCTTCTCCGTTCCTTTCCTTCTTTTTCTTCTCTCCTCTCTCTGTTGCTTCTCTCTAAAACCCAGATCTAGGGTTTTGTTTCACTTCAATTCGCTTCAAACTTTAAATTCCCAAATCTACGCAATAGCTCAAAGGATGGGCGAATTGAAGGATACCGAGGCTTACGAGGAAGAGCTCATCGACTACGAAGAAGAAGATGAAAAAGCCCCCGATTCTGCAAAACCTGCTGCTGAATCCGGCAAGAAGGGATATGTTGGCATCCATAGCTCAGGATTCCGAGACTTCCTGTTGAAACCTGAGCTTCTTCGAGCTATTGTCGATTCAGGATTCGAGCATCCATCCGAAGTGCAACACGAGTGCATCCCTCAAGCAATTTTAGGAATGGATGTCATTTGTCAAGCAAAATCTGGGATGGGAAAAACTGCAGTTTTTGTTCTTTCAACACTTCAGCAAATCGATCCTCTTCCTGGTCAAGTTGCAGCTCTTGTTCTTTGCCATACGAGAGAGCTAGCTTATCAGATTTGCCATGAATTTGAAAGGTTCAGCACATATCTTCCTGATATCAAAGTTGCTGTTTTCTATGGGGGTGTCAATATTAAGGTTCACAAAGAATTGCTTAAGAATGAATGTCCTCATATTGTGGTTGGAACACCTGGGAGGATTCTTGCCCTGACTAGAGATAAGGACCTTGGCTTAAAGAATGTGAGGCATTTTATTCTTGATGAGTGTGACAAGATGCTTGAATCACTTGACATGAGGAGAGATGTGCAAGAGATTTTCAAATTGACTCCCCATGAAAAGCAAGTCATGATGTTTTCTGCTACACTCAGCAAAGAGATCCGACCTGTTTGCAAGAAATTTATGCAAGATCCAATGGAAATTTATGTGGATGATGAGGCCAAGTTAACACTTCATGGTCTTGTTCAGCACTATATCAAATTGCAAGAATCGGAGAAGAATCGTAAGTTGAATGATCTTCTTGATGCTCTGGACTTCAACCAAGTTGTTATTTTTGTAAAAAGTGTTAGCAGAGCTGCAGAGTTGAACAAGTTGCTTGTGGAGTGCAACTTCCCTTCAATATGTATACATTCTGGAATGTCACAGGAAGAAAGGTTGAAACGATACAAAGGCTTCAAAGAAGGGAGGCAAAGGATTCTTGTTGCAACAGACTTAGTAGGAAGGGGTATCGACATAGAACGGGTTAACATAGTTATCAACTATGACATGCCTGATTCTGCTGACACTTACCTGCACAGGGTAGGAAGAGCTGGTAGATTTGGCACCAAGGGGCTTGCAATTACTTTTGTCTCTTCAACAGCTGACTCTGAAGTTCTTAATCAGGTGCAATCAAGGTTTGAAGTTGATATAAAGGAGCTTCCAGAACAAATTGACACCTCCACATATATGCCAAACTGA 1488 0.4194 MLEPKRSVEHHRVIFVITVVAGCYIFSVPFLLFLLSSLCCFSLKPRSRVLFHFNSLQTLNSQIYAIAQRMGELKDTEAYEEELIDYEEEDEKAPDSAKPAAESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPLPGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALTRDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHEKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGRQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDTSTYMPN 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00240 495 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Aip09g00240 495 Pfam Helicase conserved C-terminal domain 344 451 IPR001650 -
Aip09g00240 495 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 95 490 - -
Aip09g00240 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 465 IPR027417 -
Aip09g00240 495 SMART ultradead3 133 334 IPR014001 -
Aip09g00240 495 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 491 IPR001650 -
Aip09g00240 495 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 145 318 IPR014001 -
Aip09g00240 495 Gene3D - 327 495 IPR027417 -
Aip09g00240 495 Pfam DEAD/DEAH box helicase 139 304 IPR011545 GO:0003676|GO:0005524
Aip09g00240 495 Gene3D - 110 326 IPR027417 -
Aip09g00240 495 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 114 142 IPR014014 GO:0003724
Aip09g00240 495 CDD SF2_C_DEAD 331 460 - -
Aip09g00240 495 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 95 490 - -
Aip09g00240 495 CDD DEADc_DDX39 113 320 - -
Aip09g00240 495 SMART helicmild6 370 451 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00240 Aip-Chr9 2167993 2172296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00240 70 495 Eukaryotic Initiation Factors Gene Family AT5G11200 82.906 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00240 K12812 - gmx:100799082 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00240 09 2167993 2172296 Aip09g00240 09 2167993 2172296 ECH