Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00238 ATGGCAATGATTATGCTTCATGGGACTCTCCATGCTACAATTTACGAAGTCGATACGATCAGTGGTGCCTCGGGTGGAAATCTTTTTACCATGATCAGGCAAAATATTGAGGAGACTGTTGGTATTGGAAAGGGAGCTCCAAAAATCTATGCAACTGTTGATTTAGAGAAAGCAAGAGTGGGAAGGACTAGGAAAATACTGAATGATCATAATCCAAAATGGAATGAGTCTTTTCACATTTACTGTGCCCATACAGCTTCAAATATCATATTCACTGTGAAAGATGATAATCCTATTGGGGCGACATTGATTGGAAGAGCATATGTGCCTGTGGAGGAGGTCTTGCAGGGTGAGGAGATTGATAAATGGGTTGAAATCTTGGATGTGAACAAAAAACCAGTACAAGGTGATTCAAAGATCCATGTGAGGCTGCAATATTTTGATATCAGGAAAGATCGATGCTGGGGTCGAGGCATTAGGAGTCCTAAGTTTCCTGGAGTTCCCTATACCTTCTTTGCACAAAGACAAGGATGCAGGGTATCTCTGTATCAAGATGCTCATGTGCCTGAAAACTTTATCCCTAAGATTCCACTTGCTGGAGGGAAGACTTATGAGCCTCACAGGTGCTGGGAGGATATTTTTGATGCAATCACAAATGCAAAACACTTGATATACATTACTGGTTGGTCTGTTTATACCGAGATTTCCTTGGTAAGGGATTCTAGGAGGCCAAAGGCCGGTGGAGATTCAACACTCGGCGAGCTTCTTAAGAAGAAGGCAAGTGAAGGTGTTAAGGTGTTGATGCTTGTTTGGGACGATAGAACATCGGTTGGTTTGTTGAAAAAAGATGGATTGATGGCTACTCATGATGAAGAAACAGCACAGTTCTTCTCTAACACTCAAGTAAACTGTTGTTTATGCCCCCGAAATCCTGATGATGGAGGTAGCATTGTTCAGAGTTTCCAAATTTCTACCATGTTTACTCATCACCAGAAGATTGTTGTTGTGGACAGTGAGATGCCGGGTAAAGGATCACATATGCGAAGGCTTGTGAGTTTTGTTGGGGGTATTGATCTTTGTGATGGAAGATATGATACAGCATTCCACTCACTCTTCAGAACCTTAGACACAGCACACCATGATGATTTTCATCAACCTAACTTTCCTGGTGCTGATATCTCAAAAGGCGGTCCTAGGGAGCCTTGGCATGATATCCACTGCCGGCTCGAAGGGCCGGTAGCTTGGGATGTTCTGTTTAACTTTGAGCAGAGATGGAGGAGGCAAGGTGGAAAGGATGTACTTCTCCATATGAGAGAGCTCGAAAATTCCATTGTTCCCCCTTCCCCTGTGATGTTTCCTGAAGATCATGAGACATGGAATGTTCAGTTATTCAGATCAATTGATGGTGGTGCTGCTTTCGGTTTCCCTGATAGTCCTGAAGAGGCTGCCAAAGTAGGCCTTGTTAGTGGCAAGGATAACATCATAGACCGTAGTATTCAAGATGCTTATATCCATGCCATTCGCCGTGCCAAGAACTTCATCTATATCGAAAATCAGTACTTCCTTGGAAGCTCTTATAACTGGAAGCCTGAGGATATTAAGCCTGAAGATATTGGTGCTTTGCATCTAATTCCAAGGGAGCTTTCCCTTAAGATTGTTAGTAAGATTGAAGCCGGGGAACGATTTGCTGTGTATGTTGTGGTCCCAATGTGGCCGGAAGGTGTGCCGGAGAGTTCATCAGTTCAGGCTATATTGGACTGGCAAAGAAGGACAATGGAGATGATGTACAAGGACATTACTGAGGCTCTCCAAGCCAAGGGTATTGAGGACGATCCTCGGAACTATTTGACATTCTTCTGCCTTGGTAATCGCGAGGTGAAGAAGGATGGAGAGTATCAGCCTTCTCAAAAACCAGAGCCTGGTTCGGATTATGAGAACGCCCAAAAGGCGCGCCGCTTCATGATTTATGTTCATACCAAGATGATGATTGTTGATGATGAATACATCATTATCGGATCAGCCAACATCAACCAAAGATCAATGGACGGCGCGAGGGACTCCGAAATTGCCATGGGAGGTTACCAGCCTTACCACTTGGCAACCAGGCAGCCGGCGCGTGGCCAGATCCATGGTTTCCGAATGGCATTGTGGTATGAACACCTTGGTATGCTTCATGACTCATTCCTGAGGCCAGAAAGCAAAGAATGTATCAGCAGGGTGAACAAAGTTGCTGATCAGTATTGGGATCTCTTCTCTAAGGAGTCACTTGAGCATGACCTTCCTGGCCACCTGCTCCGGTACCCGATCAGCGTTGCCAGTGAGGGACACATCACAACTCTTCCGGGATTCGAATGCTTCCCAGACACGAAAGCGCGAATTCTTGGCGCCAAAGCAGATTACCTTCCCCCTATCCTTACTACTTAG 2424 0.4501 MAMIMLHGTLHATIYEVDTISGASGGNLFTMIRQNIEETVGIGKGAPKIYATVDLEKARVGRTRKILNDHNPKWNESFHIYCAHTASNIIFTVKDDNPIGATLIGRAYVPVEEVLQGEEIDKWVEILDVNKKPVQGDSKIHVRLQYFDIRKDRCWGRGIRSPKFPGVPYTFFAQRQGCRVSLYQDAHVPENFIPKIPLAGGKTYEPHRCWEDIFDAITNAKHLIYITGWSVYTEISLVRDSRRPKAGGDSTLGELLKKKASEGVKVLMLVWDDRTSVGLLKKDGLMATHDEETAQFFSNTQVNCCLCPRNPDDGGSIVQSFQISTMFTHHQKIVVVDSEMPGKGSHMRRLVSFVGGIDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGADISKGGPREPWHDIHCRLEGPVAWDVLFNFEQRWRRQGGKDVLLHMRELENSIVPPSPVMFPEDHETWNVQLFRSIDGGAAFGFPDSPEEAAKVGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSYNWKPEDIKPEDIGALHLIPRELSLKIVSKIEAGERFAVYVVVPMWPEGVPESSSVQAILDWQRRTMEMMYKDITEALQAKGIEDDPRNYLTFFCLGNREVKKDGEYQPSQKPEPGSDYENAQKARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLATRQPARGQIHGFRMALWYEHLGMLHDSFLRPESKECISRVNKVADQYWDLFSKESLEHDLPGHLLRYPISVASEGHITTLPGFECFPDTKARILGAKADYLPPILTT 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00238 807 Pfam C2 domain 44 126 IPR000008 -
Aip09g00238 807 Gene3D Endonuclease Chain A 199 444 - -
Aip09g00238 807 SUPERFAMILY Phospholipase D/nuclease 486 737 - -
Aip09g00238 807 PIRSF PLD_plant 1 807 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Aip09g00238 807 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Aip09g00238 807 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 148 IPR035892 -
Aip09g00238 807 CDD PLDc_pPLDalpha_2 491 700 - -
Aip09g00238 807 PANTHER PHOSPHOLIPASE D 2 807 IPR015679 -
Aip09g00238 807 CDD C2_plant_PLD 2 147 - -
Aip09g00238 807 Pfam Phospholipase D C terminal 726 797 IPR024632 -
Aip09g00238 807 Gene3D C2 domain 8 154 IPR035892 -
Aip09g00238 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824
Aip09g00238 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824
Aip09g00238 807 SUPERFAMILY Phospholipase D/nuclease 152 435 - -
Aip09g00238 807 PANTHER PHOSPHOLIPASE D ALPHA 1 2 807 - -
Aip09g00238 807 Pfam Phospholipase D Active site motif 325 363 IPR001736 GO:0003824
Aip09g00238 807 Pfam Phospholipase D Active site motif 654 680 IPR001736 GO:0003824
Aip09g00238 807 Gene3D Endonuclease Chain A 474 696 - -
Aip09g00238 807 SMART C2_3c 31 123 IPR000008 -
Aip09g00238 807 SMART pld_4 653 680 IPR001736 GO:0003824
Aip09g00238 807 SMART pld_4 325 363 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00238 Aip-Chr9 2155640 2159379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00238 1 807 Phospholipase D Gene Family (Wang group) AT1G52570 79.383 0.0 1370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00238 K01115 - gmx:100786410 1452.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00238 09 2155640 2159379 Aip08g00076 08 448717 452109 ECH
Aip09g00238 09 2155640 2159379 Aip09g00238 09 2155640 2159379 ECH
Aip08g00076 08 448717 452109 Aip09g00238 09 2155640 2159379 PCT