Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00184 ATGGAAAATTGGCTCTCTCATTTGGAAATAAGTGGTGGTGGGAGTGGCTCAAGCAGTGTATCATTTGAAGAGATTTTAAGCTTCAATGGTGGTGATCATAGCTCCAATAATAAGGATAATAATATTATTATTATTGGTGATGAGGCTAATAAACAAGAGAAGAAGAACTCCAAAAGGGGTAGTTTAGGGAATAACAATAATAATAAGAGAACAACAAAGAAGGCAAGAAATTCAATAGAGGCATTGGATCATATAATGTCTGAGAGGAAAAGGAGACAACAAATGGCTGAGAAGTTCATAGCACTTGCAGCTGCTATTCCTGGCTTGAAGAAGATAGACAAGGCATCTATACTTCAAGAAGCAATAAATTATGTGAAAGAACTTCAAGAACGCATAGCACTGCTTGAGAAAGAGAGCAACAACAAAGAACAATTGATTGTGAAAAAATCACAATTTTGTTGTTCTTCTCTGCCGTGTGACAAAAACAATAATGACAACAACATTGGTGGTAATGAAATGGTGCTACCAGAAGTGGAAGCTAGATTGTTAGAAAAGGAAATGAACGAGGAATTCAACTTAACATTGAACGATCTGGTGAAGACGTTGAGGGAGTATCTTTTGAAGTTTATGAGATGCAATAATAATAATGGTGGTCCATGCTAG 663 0.362 MENWLSHLEISGGGSGSSSVSFEEILSFNGGDHSSNNKDNNIIIIGDEANKQEKKNSKRGSLGNNNNNKRTTKKARNSIEALDHIMSERKRRQQMAEKFIALAAAIPGLKKIDKASILQEAINYVKELQERIALLEKESNNKEQLIVKKSQFCCSSLPCDKNNNDNNIGGNEMVLPEVEARLLEKEMNEEFNLTLNDLVKTLREYLLKFMRCNNNNGGPC 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00184 220 Pfam Helix-loop-helix DNA-binding domain 84 129 IPR011598 GO:0046983
Aip09g00184 220 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 84 142 IPR036638 GO:0046983
Aip09g00184 220 Coils Coil 118 145 - -
Aip09g00184 220 PANTHER BHLH TRANSCRIPTION FACTOR 1 186 - -
Aip09g00184 220 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 79 128 IPR011598 GO:0046983
Aip09g00184 220 SMART finulus 85 134 IPR011598 GO:0046983
Aip09g00184 220 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 186 - -
Aip09g00184 220 Gene3D - 67 142 IPR036638 GO:0046983
Aip09g00184 220 MobiDBLite consensus disorder prediction 48 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00184 Aip-Chr9 1548622 1551259 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00184 15 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.556 4.78e-23 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip09g00184 HLH 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00184 - - ahf:112712745 344.739