Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00182 ATGGATCACATAATGGCAGAGAGAAAGAGGAGACAAGAACTCACTGAGAGGTTCATAGCACTCTCTGCTACCATCCCTGGCTTGACCAAGACAGACAAGGCATCAATACTTAGAGCAGCCATAGATTATGTGAAGCAACTTCAAGAGCGGGTGCAAGAATTAGAAAAGCAAAACAAGAAGAGGAGCAGAGAGTCAGTGATATTGGTGAAAAAATCGAAGAACATTAATAATGAAAAAATATTATTAGAAGAAAGTACAATAATATCAACAAGTGAAACAAGAAGAAGTGAAGATGGTGGAACAGGCCTCCCTGATATTGAAGCAAGATTTATGGGGAAAGATGTTCTGATTGAGATTCATTGTGAGAAGGAAAATGGCATTGAGATGAAAATACTTAATCAGCTTGAAAATCTTCATCTTTTTGTCACTGGAAGTAGTGTTCTTCCTTTTGGCAATTCTGCTCTTGGGATCACTATTATTGCTAAGATGGGAGATTCGTGTGAAATGACAGTGAATGATGTGGTCAGAAATCTTAGGGAAGTGTTCTTGAAGGCACATCAAAATTCACATGGCATTTAA 579 0.38 MDHIMAERKRRQELTERFIALSATIPGLTKTDKASILRAAIDYVKQLQERVQELEKQNKKRSRESVILVKKSKNINNEKILLEESTIISTSETRRSEDGGTGLPDIEARFMGKDVLIEIHCEKENGIEMKILNQLENLHLFVTGSSVLPFGNSALGITIIAKMGDSCEMTVNDVVRNLREVFLKAHQNSHGI 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00182 192 Pfam Helix-loop-helix DNA-binding domain 3 48 IPR011598 GO:0046983
Aip09g00182 192 SMART finulus 4 53 IPR011598 GO:0046983
Aip09g00182 192 PANTHER BHLH TRANSCRIPTION FACTOR 1 187 - -
Aip09g00182 192 Gene3D - 1 83 IPR036638 GO:0046983
Aip09g00182 192 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 187 - -
Aip09g00182 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 65 IPR036638 GO:0046983
Aip09g00182 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 47 IPR011598 GO:0046983
Aip09g00182 192 Coils Coil 37 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00182 Aip-Chr9 1527794 1531463 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00182 2 179 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 51.667 3.46e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip09g00182 HLH 5.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00182 - - aip:107619728 359.762