Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00181 ATGGGGGAGCCATGCCACAATTATTGGTACTCTGACATGGGGATCCAAGATGATGATATCTTCAACCAACGTTACAAGATTAACACATCACTAATTGTTGATAAAGATCATATCATTAGGGAGATCATGGATCATCATGATTATCATCACCAACCAGCTTTCTCATCTGAAAGTGATAATAGTCACTCTCCCACAAATAATAATCGAAGTGGTGGAAGTGGCAATACTAGAGGTTTTGTGTTTAACAACAATAATAACAATGGATCCATGTCCATGTTCTCTCAACAACATCAACATGCACCATTATTGTTGGATATGAAAGCTTCTACTTCAACATCTTCTCCAAGATCATACATTCTATCTTTCCATGATTCCACCGTTATTGCCACCACGGCGGCGGCCGCGGCTACTCCTCCTCCTCCTCCATCATTAGAAACCTATAATAACAATGGGAAACGACCATACCAACACATTGAAGTGCCATTAGAAAATCAAGCAAAGAAGGTTAGAAGCTCCTCAGAGACACTTGATCACATAATGACTGAGAGAAAAAGGAGAAGGGAATTAACTGAGAGATTCATAGCACTTTCAGCCACTATTCCTGGCTTGAAGAAGATTGACAAATCCACTATACTTAGCGAGGCAATAAGTCATGTGAAACAACTGAAACAACGAGTGAAGGAGTTAGAAGAACAAAGGAAGAAGATAAGTGTAGAATCAGTGTCATTCATTATTAGGAAATCCCACCTCATCAATGGTACTACTAATAATAAGGTTGATGATGAAGGTGCAATCAATAATAAAGCAGCAACAAGTGAAATAGCACTACTCCCAACGGTGGAAGCAAGAGTGTTCAAAAATGATGTTCTAATAAGGATCCATTGCATGAAACAAAGTGGTATTATGCTCAAAATATTGGGACATCTTAAGAGTTTTGATCTCTCTGCCATTAGCAATAGTGTATTGCCATTTGGAAATTCCACTCTTGATATCACCATTATTGCTCAGATAGGTGACAAATTCAACGTGACAATGAATGATTTAGTGAAAAATCTGAGACTGTCTATCTTGGAGTCCCCTAATGATGATGAAGAACCACACAACAGTTATTGA 1113 0.3836 MGEPCHNYWYSDMGIQDDDIFNQRYKINTSLIVDKDHIIREIMDHHDYHHQPAFSSESDNSHSPTNNNRSGGSGNTRGFVFNNNNNNGSMSMFSQQHQHAPLLLDMKASTSTSSPRSYILSFHDSTVIATTAAAAATPPPPPSLETYNNNGKRPYQHIEVPLENQAKKVRSSSETLDHIMTERKRRRELTERFIALSATIPGLKKIDKSTILSEAISHVKQLKQRVKELEEQRKKISVESVSFIIRKSHLINGTTNNKVDDEGAINNKAATSEIALLPTVEARVFKNDVLIRIHCMKQSGIMLKILGHLKSFDLSAISNSVLPFGNSTLDITIIAQIGDKFNVTMNDLVKNLRLSILESPNDDEEPHNSY 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00181 370 SMART finulus 179 228 IPR011598 GO:0046983
Aip09g00181 370 Gene3D - 171 242 IPR036638 GO:0046983
Aip09g00181 370 Pfam Helix-loop-helix DNA-binding domain 178 223 IPR011598 GO:0046983
Aip09g00181 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 243 IPR036638 GO:0046983
Aip09g00181 370 MobiDBLite consensus disorder prediction 50 89 - -
Aip09g00181 370 PANTHER BHLH TRANSCRIPTION FACTOR 30 359 - -
Aip09g00181 370 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 30 359 - -
Aip09g00181 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Aip09g00181 370 Coils Coil 212 239 - -
Aip09g00181 370 MobiDBLite consensus disorder prediction 54 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00181 Aip-Chr9 1512140 1515789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00181 177 358 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 42.632 5.22e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip09g00181 HLH 9.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00181 - - adu:107463717 600.512