Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00165 ATGGCTAGACCACAACAACGCTATAGAGGTGTTCGCCAGAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTTATTGAAGACAAGAATATGGCTAGGAACATTTGAAACAGCTGAGGATGCAGCAAGAGCATATGATGAAGCAGCTAGGTTAATGTGTGGACCAAAAGCAAGAACCAATTTCCCATTTAATCCAAATTTGTCACAATCATCATCATCATCTTCTTCTTCTTCTTCTAAGCTACTATCTCCTACTTTGACTGCAAAATTACACAAATGCCACTTGGCTTCCCTTGCCCTTCAAATGTCCAATAACAAGCAAAAAACATCACAACCCAACAAAGATCCTCAACCACCACCACCACCATCATCATCATCAACATCATCAAATAATAGATTCAATACTCAATTCCCAATTGGTGCTGGAACAATTGCATATGAGGAGTTACACTGGCTAGAAGGGAACAATAATTGGGGTGGCATTATTGAAGGACATCAAGTTGAGGTTGCACAACAACAATTTCAGCCAGTTCTTGAAGATGATCACATTGAGCAAATGATACAAGAGTTGCTTGATTGTGGATCAATTGAACTTTGCTCAATTGGGTCAAATTAA 621 0.4026 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPFNPNLSQSSSSSSSSSSKLLSPTLTAKLHKCHLASLALQMSNNKQKTSQPNKDPQPPPPPSSSSTSSNNRFNTQFPIGAGTIAYEELHWLEGNNNWGGIIEGHQVEVAQQQFQPVLEDDHIEQMIQELLDCGSIELCSIGSN 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00165 206 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Aip09g00165 206 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Aip09g00165 206 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Aip09g00165 206 MobiDBLite consensus disorder prediction 106 136 - -
Aip09g00165 206 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 202 - -
Aip09g00165 206 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Aip09g00165 206 PANTHER ETHYLENE RESPONSE FACTOR 1 202 - -
Aip09g00165 206 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Aip09g00165 206 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Aip09g00165 206 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Aip09g00165 206 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00165 Aip-Chr9 1413699 1415272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00165 1 203 AP2-EREBP Transcription Factor Family AT5G25190 58.128 1.81e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip09g00165 AP2 9.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00165 - - adu:107463739 330.487