Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00152 ATGTCAGGTGAAGAAGCCCCAGTTGTGGCAGCTGAGCCAGCAGCTCCCGCCATTGGTGAGCCAATGGATATTATGACTGCCTTACAGCTTGTGCTCAGGAAGTCACTTGCTTATGGTGGTCTTGCACGTGGCCTTCATGAGGGTGCTAAGGTTATTGAGAAGCGCACCGCACAGCTTGTTGTTCTCGCAGAGGACTGCGACCAACCCGACTATGTCAAACTTGTCAAGGCCCTTTGTGCTGAGCACAATGTTAGCCTGCTGACAGTTCCAAGTGCAAAGACCCTTGGAGAGTGGGCTGGTTTGTGCAAGATTGATTCAGAAGGAAAAGCCAGGAAGGTGACTGGCTGCTCTTGTGTTGTTGTGAAGGACTTTGGCGAGGAACATGAAGCTTATAACGTTGTCCTTCAGCATGTGAAAGCTCAATGA 426 0.5047 MSGEEAPVVAAEPAAPAIGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKRTAQLVVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00152 141 PRINTS Ribosomal protein S12E family signature 31 44 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aip09g00152 141 PRINTS Ribosomal protein S12E family signature 45 61 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aip09g00152 141 PRINTS Ribosomal protein S12E family signature 86 107 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aip09g00152 141 PRINTS Ribosomal protein S12E family signature 111 124 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aip09g00152 141 Gene3D - 9 141 IPR029064 -
Aip09g00152 141 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 27 120 IPR004038 -
Aip09g00152 141 PANTHER 40S RIBOSOMAL PROTEIN S12 1 141 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aip09g00152 141 SUPERFAMILY L30e-like 21 139 IPR029064 -
Aip09g00152 141 ProSitePatterns Ribosomal protein S12e signature. 27 45 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aip09g00152 141 PANTHER 40S RIBOSOMAL PROTEIN S12 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00152 Aip-Chr9 1269203 1271072 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00152 18 141 Cytoplasmic Ribosomal Protein Gene Family AT1G15930 76.613 5.74e-67 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00152 K02951 - gmx:100500093 248.054