LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip09g00135	ATGGATAGGCTAAGATCGATCTTCCATGTTGGTGGCCGCGCAAGGAAGAATCCGTCGCAATCCTTTAGGCTAGGAGTGAAGAAAGGATCAGCAGGACTCAGAACATTTGGAAGGTCACTGAAAACTGGTGTAACTACTTGGGCAGTGTTCCCTGAAGATCTCAAAGTTTCAGAGAAGAAAGTGTTTGATCCTCAAGACAAGCACCTTCTCCATTGGAACAAGTTCTTTGAGATCCTCTGCATTTTTTCAGTAGCTGTTGACCCTTTCTTCTTCTATCTCCCTTACTTCAACGTCAAGTCATTCTGCCTCGCCATAGATAGCACGCTGGCGAATTTTACAGCAGCACTGAGGACTGTGTTGGATTTTATCTATCTCCTGCGCATAAGCTTTCAGTTCCGAACTGCTTATATCGCGCCTTCATCTCGTGTGTTTGGAAGAGATTATAGTGTGGAAATATCTATACAAAACAAGACATTCAGAGAAAATGCACTGCTTGGAGCCATTTACTATTTGATTTGGTTTATGCTAGCTAGTCATATAACTGGCTCCGTTTGGTACTTACTTGCCATAGAACGCAATGACACATGTTGGAACAATGTTTGTCTTGAAGATAATAGATGTAACAGTCATTTCTTGTACTGTGGAAGTACCAATAAGCACATCCCAGGGTTTGATGCTTGGAAAAATGTCAGTGAGGAAGTTCTTGTAAAGAAGTGCTTTGTTGATGGTGAGTTCAATTATGGAATCTTTGCTCAAGCAATCAAGAGTGGTATTGTTGCTTCTGTTGAAGTCTTTCCTAAGTTCTGTTACTGTTTATGGTGGGGCCTTCAAAATCTGAGTACAATTGGCCAAGGGCTTTCAACCAGCACCTACAGTAAAGAGGTGTGGTTTTCCATAGCAATAGCTGTTATGGGTCTCATCCTTTTCGCACTTCTGATTGGAAACATGCAGGTGAACAAACAGCAAGCACTATTGATATTCAATTTATTGAGGATGCTTATTGATCTGCAAATTTGCTATGATCAATACAAGTGGCTGAATACCCGAGGCGTGGACGAAGAGAGCTTGATGAAGAGCCTTCCAAAAGATTTAAGGAGAGACATCAAACGGCATCTTTGTTTGAATCTGGTTAAAAGGGTTCCTCTCTTTGCTAACATGGAGGAACGCCTGCTCGATGCTATATGCGAGCGACTGAAACCTACTCTGTATACAGAGGGCACTGACATAGTTAGGGAAGGAGACCCTGTCAACGAGATGCTCTTCATCATCCGTGGACGCCTAGAGAGTGTCACCACAGATGGTGGAAGGAGTGGATTCTTTAACAGAGGGCTTCTCAAAGAAGGAGACTTCTGTGGTGAGGAGCTACTAACATGGGCACTAGATCCAAAAGCTGCAGCAAACTTGCCATCATCTACTAGGACAGTGAAGGCCATAAATGAGGTCGAGGCATTCGCATTGGAAGCTGAGGAGCTTAAGTTTGTCGCTTCGCAGTTTAGATACATTCATAGTAGGCAGGTTCAGCATACCTTCAGATTCTACTCACAGCAATGGAGGACATGGGCCGCTATCTACATTCAAGCCGCGTGGAGGAGGTATATGAGGAGGAAACACACCATGCAAAGAAGGCAGGAGGAAGAGTATTATTATGATTCTGATGACAGTGGTGGTGATTCTGCAAAGGCCTTGGTTAAACGTTCCTCAAGTTCATCTAGCTTTGCCACAACCATGTATGCTTCACGCTTTGCCGCGAATGTACTTCACGGTCATAGGCTTCGTGAAGCAGGTAGTTCCACTAGTCTAGGAAGAATTCAAAAACCGTCTGAACCTGACTTCAGTCATTATGGTCCAAAGTGA	1854	0.4374	MDRLRSIFHVGGRARKNPSQSFRLGVKKGSAGLRTFGRSLKTGVTTWAVFPEDLKVSEKKVFDPQDKHLLHWNKFFEILCIFSVAVDPFFFYLPYFNVKSFCLAIDSTLANFTAALRTVLDFIYLLRISFQFRTAYIAPSSRVFGRDYSVEISIQNKTFRENALLGAIYYLIWFMLASHITGSVWYLLAIERNDTCWNNVCLEDNRCNSHFLYCGSTNKHIPGFDAWKNVSEEVLVKKCFVDGEFNYGIFAQAIKSGIVASVEVFPKFCYCLWWGLQNLSTIGQGLSTSTYSKEVWFSIAIAVMGLILFALLIGNMQVNKQQALLIFNLLRMLIDLQICYDQYKWLNTRGVDEESLMKSLPKDLRRDIKRHLCLNLVKRVPLFANMEERLLDAICERLKPTLYTEGTDIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAAANLPSSTRTVKAINEVEAFALEAEELKFVASQFRYIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRYMRRKHTMQRRQEEEYYYDSDDSGGDSAKALVKRSSSSSSFATTMYASRFAANVLHGHRLREAGSSTSLGRIQKPSEPDFSHYGPK	617

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip09g00135	617	SMART	cnmp_10	382	513	IPR000595	-
	Aip09g00135	617	MobiDBLite	consensus disorder prediction	594	617	-	-
	Aip09g00135	617	SUPERFAMILY	Voltage-gated potassium channels	64	321	-	-
	Aip09g00135	617	Pfam	Ion transport protein	162	321	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Aip09g00135	617	Pfam	Cyclic nucleotide-binding domain	403	492	IPR000595	-
	Aip09g00135	617	ProSiteProfiles	cAMP/cGMP binding motif profile.	382	465	IPR000595	-
	Aip09g00135	617	Gene3D	-	51	323	-	-
	Aip09g00135	617	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED	9	148	-	-
	Aip09g00135	617	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED	153	614	-	-
	Aip09g00135	617	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	9	148	-	-
	Aip09g00135	617	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	153	614	-	-
	Aip09g00135	617	CDD	CAP_ED	382	513	IPR000595	-
	Aip09g00135	617	ProSiteProfiles	IQ motif profile.	518	546	IPR000048	GO:0005515
	Aip09g00135	617	Gene3D	Helix hairpin bin	334	373	-	-
	Aip09g00135	617	Gene3D	Jelly Rolls	380	500	IPR014710	-
	Aip09g00135	617	SUPERFAMILY	cAMP-binding domain-like	370	499	IPR018490	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip09g00135	Aip-Chr9	1084443	1088303	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip09g00135	11	612	Ion Channels	AT4G30560	51.576	0.0	632

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip09g00135	K05391		-	gmx:100810453	808.52