Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00064 ATGTTTGGGGAGTCATCAGGAAAGTGGTTGGATTCTGAATTATGGCATGCTTGTGCTGGTTCCATGGTTCAAATGCCACCTCTGAACTCAAAAGTTTTGTACTTTCCACAAGGGCATGCAGAGCATGCTCATGGAGGAAAAGTGGATTTCAGAACGAGAATCCCTTCTTTCATTCCATGCTGGCTCTCTGGAATCAAATACATGGCAGATTCTGATACTGATGAGGTCTTTGTCAAGTTGTTTTTGACACCTCTCACTCAAGAAAACACCAATGCATTGTTAATGGATTTGGAGGATGGTGGTGATGATTGTGGTAACAACAATGGAGGAGTTGTTGAGGGGGGTCATCAAGAGAAACCTGCTTCATTTGCAAAGACACTGACACAATCTGATGCCAACAATGGTGGAGGGTTCTCAGTGCCTCGTTACTGTGCTGAAACCATATTCCCAAGGCTGGATTATTCTGCTGATCCTCCTGTTCAGAACATTGTTGCCAAAGATGTTCATGGAAATTGCTGGAAGTTTAGGCACATCTATAGAGGAACTCCTCGCAGGCACCTATTGACCACTGGATGGAGCAATTTTGTGAGCCAGAAGAAGCTTGTAGCTGGTGATTCCATTGTGTTCTTGAGAGCTAAGGATGGTGATCTGTGTGTTGGGATAAGGAGGGCCAAGAAGGTGGCAGTTGGAGGCGGCGAGGTGTCGGTGTCATCGGTGGTTGAAGCTGTGAGTTTTGGTGTTAATGGAAGGCCATTTGAGGTTGTGTACTATCCAAGAGGAAGCTCACCTGAGTTTTGTGTTAAGGCCTCAGTTGTGAGAGATGCAATGAAAGTGAGGTGGTGTTCTGGGATGAGGTTCAAGATGCCCTTTGAGACTGAGGATTCTTCTAGAATCAGTTGGTTCATGGGAACCATTTCTTCTGTTCAGCTTCTTGATCCCATTCATTGGCCTAATTCTCCATGGCGTCTTCTGCAGGTGGTGTGGGATGAACCAGAATTACTACAGCATGTGAAGTGTGTAAATCCTTGGTTGGTTGAATTAGTCTCAGACATTCCCACCTACCATCTTTCTCCATTCTCTCCAACTAGAAAGAAACCAAGGTTTCTTCACAATCAAGATTTTCACCTCATCAATAACCAACTTCCAATAATGCCAGGATTTCCCAGCAATTATAGTTACAGTAATGATAATCATCTTGTTATGAATCATTCTTCTAAGTCCTTATTGATGAACATTCAAGAGAATAACAGTATTGCAGGCATACAGGGAGCCAGGCATGCTCAACTTCTTGATCTGTCTCCATCTGATTATCCTTTCTTCAACAATCTTCCATCACAATCACAATCACACAATATGAATCTTATTAGTCCCCCTTATTGTGGGACCTATAAGAACAGCAATGCTGATATATCTTGCTTGTTAAGTGTTGGAAATTCTAGCCATAATTTAAAGGAAGAACACAATGAAGAAGTGAAATCATCATCACCACCATCCCATATCTTCTTGTTTGGACAACTGATTCACACTGAACAGCATTGTTCAAACGGTGGCAGTTCTAGCTCAAATGGGAACAATTCATCTGATGAAGGGACTTTGCTGAAGATGAAATCAAATAATGCTTCTGAATTGCATCTAAATAGTAGTCCAGTAGAGAAGAACCCTTCTTCTAATGGAGGGTCTCCCTGGTACAAAGATCAGCACAAATCTGGTCTTGGAACAGAAAATGTTAATCTACTTTGCTTGGCTCTATAG 1752 0.4235 MFGESSGKWLDSELWHACAGSMVQMPPLNSKVLYFPQGHAEHAHGGKVDFRTRIPSFIPCWLSGIKYMADSDTDEVFVKLFLTPLTQENTNALLMDLEDGGDDCGNNNGGVVEGGHQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNIVAKDVHGNCWKFRHIYRGTPRRHLLTTGWSNFVSQKKLVAGDSIVFLRAKDGDLCVGIRRAKKVAVGGGEVSVSSVVEAVSFGVNGRPFEVVYYPRGSSPEFCVKASVVRDAMKVRWCSGMRFKMPFETEDSSRISWFMGTISSVQLLDPIHWPNSPWRLLQVVWDEPELLQHVKCVNPWLVELVSDIPTYHLSPFSPTRKKPRFLHNQDFHLINNQLPIMPGFPSNYSYSNDNHLVMNHSSKSLLMNIQENNSIAGIQGARHAQLLDLSPSDYPFFNNLPSQSQSHNMNLISPPYCGTYKNSNADISCLLSVGNSSHNLKEEHNEEVKSSSPPSHIFLFGQLIHTEQHCSNGGSSSSNGNNSSDEGTLLKMKSNNASELHLNSSPVEKNPSSNGGSPWYKDQHKSGLGTENVNLLCLAL 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00064 583 SMART B3_2 123 225 IPR003340 GO:0003677
Aip09g00064 583 Gene3D - 279 352 - -
Aip09g00064 583 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 233 544 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip09g00064 583 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 230 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip09g00064 583 Pfam B3 DNA binding domain 123 224 IPR003340 GO:0003677
Aip09g00064 583 Pfam Auxin response factor 248 325 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aip09g00064 583 SUPERFAMILY DNA-binding pseudobarrel domain 118 224 IPR015300 -
Aip09g00064 583 PANTHER AUXIN RESPONSE FACTOR 16 233 544 - -
Aip09g00064 583 PANTHER AUXIN RESPONSE FACTOR 16 5 230 - -
Aip09g00064 583 MobiDBLite consensus disorder prediction 513 532 - -
Aip09g00064 583 Gene3D - 121 225 IPR015300 -
Aip09g00064 583 CDD B3_DNA 122 223 IPR003340 GO:0003677
Aip09g00064 583 ProSiteProfiles B3 DNA-binding domain profile. 123 225 IPR003340 GO:0003677
Aip09g00064 583 MobiDBLite consensus disorder prediction 544 563 - -
Aip09g00064 583 MobiDBLite consensus disorder prediction 544 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00064 Aip-Chr9 539176 542157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00064 8 544 B3 DNA Binding Superfamily AT4G30080 50.332 4.86e-180 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aip09g00064 B3 2.1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00064 - - adu:107491554 1132.09