Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00054 ATGGATAGGAAAGAAAGCCTTTGTACTAACACCTGGACAGAGCTGTCTTCCTTAACTAATTGTGGAAATGGATTGCAGATAAACTTGTCCCCTGATCCTTCAATTTCAGATTATGGGAAAAGGGTAGAAGCACCTTTCAAAGATTTTAACCAACCCTCTCAAATGCAGTCTCTACTTTCCAAGAATGTCATTAAGATTGCTGATCAAGAAAACTGTCCACCAAGTGACTCATCTCAAACCAGTATACTCCAAAATTGGGATGCCAGTGTGATGTTAAATAATCTTTCCTTCTTGGAAAAAAAGGTTCATCAACTTCAGGAGTTAGTGTGCTTGATTGTTAGTAAAAAGGGCCAAACTTTCGGACAGCCTAATGAACTGTTAACTCAGGAACAACAGCTCATTACTGCTGATCTTACATCAATTATTGTTCAGTTGATCTCTTCTGCAGGTAGTCTTCTCCCTTCTGCCAGACATACCCTTACAAATACCAGTCCATTGGTTCAACAGCTTTGCCAGCTTCAGGGGATTACGGTTCCTTTTGCGTCCGGCTCAGGCCAAAGTAGTGTTCAACCACAAAATAGTGGGGCAGATAAATTATCTGAGAGCTCACTGAAGAATGATCTACCAAATAATTGTGATCTGGAGCAAAAGTACAATGTGGAAGAACATGAATTGAGGGATGAGGAAGATGCTGATGATGGAGAGAACCTCCTGCCTGGTTCCTATGAGATTTTACAATTAGAAAAAGAAGAAATCCTTGCCCCACATACACATTTCTGTACAATTTGTGGGAAGGGATTCAAGAGAGATGCAAATCTCCGAATGCACATGCGAGGCCATGGTGATGAGTACAAAACCGCAGCTGCTCTTGCAAAACCTCATAAAGAATCTGAGTCACAACCTAAGCTTATCAAGAGGTATTCTTGCCCCTATGCTGGCTGCAAGCGTAACAAGGATCACAAAAAATTTCAACCTCTGAAGACAATTTTGTGTGTCAAAAATCATTACAAAAGAACACACTGTGACAAGAATTACACTTGCAGCAGATGCCACATAAAGAAGTTTTCAGTCATGGCGGATCTTAAAACTCATGAAAAGCACTGTGGCAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAGGACAAGCTTTTTGGACATATTGCTCTTTTCCAAGGCCATACACCAGCCATTCCCATGGAAGACAATTATAAAAGAACAACAGGCCTTCCAGACCAAGATAATAGCAAAGCAGAAGTTATGAGCTTCAGTTCTGGATTAAATCCTTCAACTGAAAATGGAGTTCAAAATGTCATGGATGTAAAAGGAAACATTGATGATCCTATTACTTGTTTCTCTCCATTGAACTTTGAAGCTAACTTTGGTGGCTTTAATGAATTCACTGAACCTCAATTTGATGATGGCTCGGAAGGTTCTTTCTCTTTTCTCATCCCTGGATCTTTCAAATCTGGAGAAGTATCAAGCTCTGATGATGTCGTTTGA 1512 0.4015 MDRKESLCTNTWTELSSLTNCGNGLQINLSPDPSISDYGKRVEAPFKDFNQPSQMQSLLSKNVIKIADQENCPPSDSSQTSILQNWDASVMLNNLSFLEKKVHQLQELVCLIVSKKGQTFGQPNELLTQEQQLITADLTSIIVQLISSAGSLLPSARHTLTNTSPLVQQLCQLQGITVPFASGSGQSSVQPQNSGADKLSESSLKNDLPNNCDLEQKYNVEEHELRDEEDADDGENLLPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPHKESESQPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKNYTCSRCHIKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPMEDNYKRTTGLPDQDNSKAEVMSFSSGLNPSTENGVQNVMDVKGNIDDPITCFSPLNFEANFGGFNEFTEPQFDDGSEGSFSFLIPGSFKSGEVSSSDDVV 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00054 503 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 490 - -
Aip09g00054 503 Gene3D Classic Zinc Finger 242 322 - -
Aip09g00054 503 SUPERFAMILY beta-beta-alpha zinc fingers 256 284 IPR036236 -
Aip09g00054 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 285 IPR013087 -
Aip09g00054 503 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 490 IPR044300 GO:0010044|GO:0010447
Aip09g00054 503 SMART c2h2final6 345 367 IPR013087 -
Aip09g00054 503 SMART c2h2final6 307 340 IPR013087 -
Aip09g00054 503 SMART c2h2final6 258 280 IPR013087 -
Aip09g00054 503 MobiDBLite consensus disorder prediction 184 211 - -
Aip09g00054 503 ProSitePatterns Zinc finger C2H2 type domain signature. 260 280 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00054 Aip-Chr9 490370 491881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00054 225 487 C2H2 Transcription Factor Family AT1G34370 69.091 2.10e-129 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip09g00054 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00054 - - gmx:100170687 708.753