Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00053 ATGGAAGACTACTCAGAGGAAGATTATGAGTTCCTGAACCTTAGCCTTTCAGTTACTACTCCTTCTTCTAGGGAAACCAACATGATCATGAAGAAAAAGAAGAAGAACTATGAAGCCAAGATCTTGAGGCTCCTCCAAGTCAGGGAAAACATGCTAAGACAAGATCACCATAACCACCATCACCACCTCCAAAGAAGAAAACCAGGCACCAACAACAACAACAATCTCATCCACTTGCTCCTCACAACGGCCACCGCCATTGACGAAGACAGCAACAACATTGCTGCATCTCTTGACAATCTCACAGATCTGTACCAAACAGTTTCCCTAACAGGTGATTCAGTTGAGCGTGTCGTGGCGTATTTCGCCGATGGCCTCGCCGCCAGGCTCCTCACAAAGAAATCTCCATTCTATGACATGCTCATGGAGGAGCCAACATGTGAAGAAGAGTTTCTTGCATTCACAGATCTCTATAGAGTCTCACCTTACTACCAATTCGCTCATTTCACTGCAAACCAAGCAATCTTAGAAGCCTTTGAAGAAGAAGAAGACAGGAACAACCGTTCAATCCATGTCATTGACTTTGACGTCTCCTACGGATTCCAATGGCCTTCTCTAATCCAATCACTCTCAGAGAAAGCTTCAAGCGGAAACCGCATATCTCTAAGGATCACCGGATTCGGCACCACTCTGAAGGAGCTTCAAGAAACGGAGTCCAGATTGGTGAGCTTCTCCAAAGGCTTCGGTAACCTTGTGTTCGAGTTTCAAGGGTTGTTGAGAGGGTCCAGGATCACGAATCTGAGGAAGAAGAAGAACGAGAGTGTTGCAGTGAACCTTGTTTCATACCTCAACAGTGCGAGTAACAGCAGTTTGTTGATGAATTTCTCTGACACATTGGGATTCGTACGGTCTCTCAGGCCTTCGGTTGTGGTGCTGGTGAAGCAAGAAGGTAGCAGGAGCATTAGAACGTTCTTGTCTCGGTTCACAGAGTCATTGCATTACTTTGCCGCCATGTTTGATTCCCTTGATGATTGTCTTCCGCTCGAGAGCGCAGAGAGGTTGAGGATTGAGAAGAAGCTTCTCGGGAAAGAGATCAAGAGCATGCTCAACTGTGACATGGACATGGACGGCGTGGATTGTCCCAAGTATGAGAGGATGGAAGCGTGGAAAGCCAGAATGGAGAATCATGGTTTTGTTGCCATGAAGATGAGCTCCAAATCTCTCATGCAAGCTAAGCTTCTTCTCAAGATGAGGACTCATTATTACTATTCTCCACCACTTCAATTTGATGATGATGCCGCCGCCGCCGCCGGCGGTGGTTTCAGGATTTCTGAAAGGGACCAGGGTAGAGCCATTTCTTTGGGGTGGCAGAATAGGTTTCTTCTCACTGTGTCCGCATGGCAATTACCACTTTCATCATCATAA 1425 0.466 MEDYSEEDYEFLNLSLSVTTPSSRETNMIMKKKKKNYEAKILRLLQVRENMLRQDHHNHHHHLQRRKPGTNNNNNLIHLLLTTATAIDEDSNNIAASLDNLTDLYQTVSLTGDSVERVVAYFADGLAARLLTKKSPFYDMLMEEPTCEEEFLAFTDLYRVSPYYQFAHFTANQAILEAFEEEEDRNNRSIHVIDFDVSYGFQWPSLIQSLSEKASSGNRISLRITGFGTTLKELQETESRLVSFSKGFGNLVFEFQGLLRGSRITNLRKKKNESVAVNLVSYLNSASNSSLLMNFSDTLGFVRSLRPSVVVLVKQEGSRSIRTFLSRFTESLHYFAAMFDSLDDCLPLESAERLRIEKKLLGKEIKSMLNCDMDMDGVDCPKYERMEAWKARMENHGFVAMKMSSKSLMQAKLLLKMRTHYYYSPPLQFDDDAAAAAGGGFRISERDQGRAISLGWQNRFLLTVSAWQLPLSSS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00053 474 ProSiteProfiles GRAS family profile. 67 468 IPR005202 -
Aip09g00053 474 PANTHER OSJNBA0084A10.13 PROTEIN 19 468 - -
Aip09g00053 474 Pfam GRAS domain family 76 468 IPR005202 -
Aip09g00053 474 Coils Coil 34 54 - -
Aip09g00053 474 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 19 468 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00053 Aip-Chr9 476420 477955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00053 79 468 GRAS Transcription Factor Family AT2G04890 32.242 6.98e-53 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip09g00053 GRAS 5e-89 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00053 - - gmx:100813979 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00053 09 476420 477955 Aip09g00053 09 476420 477955 ECH