Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00049 ATGAGAAGAACAATGGTCATCGTCAGGCTGTTATTGCTGGTATCTTCACTTGTCTTATCGGCATCAAGAAGAGTTCCTTCTTCTTCTTCTTCTTCTTCTCATTCTTCTGGTAACATTGATTGGTGGTGCAACCTAACGCCACACCCTGGAACATGCAAGTACTACTTAGGTCAAAGCAACCAACAGCACACAACAATAATGAAGCACAAAACCGAGTTGAGGAGGATGCTTGTGAAATCTGCATTAGAGGAAGCAACCATGATGCAAAAGGAAGCACATGGTTTGGACCAAAACTTGATCAAGACAAAGAACCATGAAGCTGTGCATGGCGATTGCTTGAAGCTCTACGACGACACCATCTTCCATCTCAAGCGTACCCTGGAATGCCTTAACAACAACAACTGTTCAGCAGTTGATGCACAAACATGGCTCAGCACTGCTCTCACAAACATCCAAACGTGTCAAACGGGTGCACAAGAACTCAGCGTTCAAGATTTCAAGGTTCCATCTAAGAACACCAATGTCACTGAGATGGTGAGGAATAGCTTAGCCATCAACTTGGATTTCGTCAAGATGATGAAACAACAACCACATGCAAATCGCACATTACCAGAAGCAGAGGAACAAGAAACAGAAGAAGATTTTCCAAGCTGGTTTTCCGGTCACGAAAGGAAGCTTCTTCAATCTGGCTCTAGCGCGATAAAGGCTCACGTTGTGGTGGCGAAAGACGGATCGGGGAATTTCAAGACGGTGCAAGAAGCGCTGAACGCGGCGGCGAAGAGAACCGTGAAGACAAGCAGATTTGTAATATACGTGACAAAAGGAGTATACAAAGAAAACATAGAGGTGGAGAAAAACAACGATAACGTGATGCTGTTTGGTGACGGCATGAGAAACACCATCATTACCGGCAGCAGAAGCTCTCAAGACGGTTACACAACATACAGCTCCGCAACCGCCGGCATAGATGGGCTTCACTTCATCGCAAGAGACATCACTTTCCAAAACACCGCGGGCCCACGCAAGGGCCAAGCTGTGGCCCTGAGATCCGCCTCCGACCTCTCTGTGTTCTACAAGTGCGGCATTGTGGGCTACCAAGACACGCTCATGGCCCACGCGCAGCGCCAGTTCTACAGACAGTGCTACATCTACGGCACCGTTGACTTCATCTTCGGCAACGCCGCCGTGGTCTTCCAAAACTGTCACATATTTGCAAGAAAGCCCCTGGATGGGCAGGCCAACACCATCACCGCACAGGGCCGAGGGGATCCCTTCCAGAACACCGGCATCTCCATCCACAAATCAGTTATCAAAGCCGCACCGGATCTCGTTCCTGTTTTGGACAAGGTTCAGACCTTCTTGGGCCGGCCCTGGCAGCAGAACGCTAGGGTTGTTGTCATGAGGACTTATTTGGACTCTCTTATAAGCCCATTGGGCTGGGATGAATGGAATGGATCTGACTTTGCCAAGGATACTTTGTATTTCGGAGAGTACGAGAATTCTGGGCCTGCTTCCGATACAAGCAAAAGAGTGAAATGGCCCGGTTTTCATGTGATATCAAACCCAAAAGAAGCGTCACAATTCACTGTGACTTCTCTTCTTGCTGGTCGCACCTGGTTGCCTACCACATCTGTTCCCTTCAGCTCTGGCCTCTGA 1656 0.4861 MRRTMVIVRLLLLVSSLVLSASRRVPSSSSSSSHSSGNIDWWCNLTPHPGTCKYYLGQSNQQHTTIMKHKTELRRMLVKSALEEATMMQKEAHGLDQNLIKTKNHEAVHGDCLKLYDDTIFHLKRTLECLNNNNCSAVDAQTWLSTALTNIQTCQTGAQELSVQDFKVPSKNTNVTEMVRNSLAINLDFVKMMKQQPHANRTLPEAEEQETEEDFPSWFSGHERKLLQSGSSAIKAHVVVAKDGSGNFKTVQEALNAAAKRTVKTSRFVIYVTKGVYKENIEVEKNNDNVMLFGDGMRNTIITGSRSSQDGYTTYSSATAGIDGLHFIARDITFQNTAGPRKGQAVALRSASDLSVFYKCGIVGYQDTLMAHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCHIFARKPLDGQANTITAQGRGDPFQNTGISIHKSVIKAAPDLVPVLDKVQTFLGRPWQQNARVVVMRTYLDSLISPLGWDEWNGSDFAKDTLYFGEYENSGPASDTSKRVKWPGFHVISNPKEASQFTVTSLLAGRTWLPTTSVPFSSGL 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00049 551 SMART PMEI_2 34 185 IPR006501 GO:0004857
Aip09g00049 551 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 186 IPR035513 -
Aip09g00049 551 PANTHER PECTINESTERASE 17 550 - -
Aip09g00049 551 Pfam Pectinesterase 237 536 IPR000070 GO:0030599|GO:0042545
Aip09g00049 551 CDD PMEI-like_3 41 186 - -
Aip09g00049 551 Pfam Plant invertase/pectin methylesterase inhibitor 39 185 IPR006501 GO:0004857
Aip09g00049 551 SUPERFAMILY Pectin lyase-like 232 550 IPR011050 -
Aip09g00049 551 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 186 IPR006501 GO:0004857
Aip09g00049 551 Gene3D - 231 551 IPR012334 -
Aip09g00049 551 PANTHER PECTINESTERASE 17 550 - -
Aip09g00049 551 ProSitePatterns Pectinesterase signature 2. 383 392 IPR033131 -
Aip09g00049 551 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 188 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00049 Aip-Chr9 406982 408753 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00049 42 551 Carbohydrate Esterase AT5G51490 54.528 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00049 K01051 - gmx:100806133 759.214