Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00029 ATGACAACTAGTTCAGCTCAAGGTTCCACCGATTGGTGCCAGCAAGAGAGTGAGAGAGACACACCAAACGGAAATGGGAAATCCTCCGACGCAGCCACCAAAGCTTATCCAACACCAACAGCTTTGTACGACGACCTTGCCCGTGATTCCAACCTCTTTTGGGATAAGCTTGAATCTTTTCACAAATCATTCGGCACTAAATTTAAGGTTCCCACCATAGGAGGAAGGCCACTAGATCTATATCGCCTTTTCGTGGAAGTAACATCTCGTGGTGGTATTGAAAAGGTAATTGTAGAACGCAAATGGAAGGATGTGATTGTGGGCTTCAAGTTTCGAGAGACTATTACAAGTGCATCATTTATGGTGCGCAGATACTATCTATCATTGCTTTATCACTTTGAGCAAGCGTATTACTTTCGGAAACAAGTCCCTCCTTCCTCAACACCTGATCCTGCAAATAGGAGTCTCGTTGATAGCTTCACACCCTTTGGTGAAGGTACTGCTTTGAATGGTTTGCATGTTCAGGATTAG 531 0.4426 MTTSSAQGSTDWCQQESERDTPNGNGKSSDAATKAYPTPTALYDDLARDSNLFWDKLESFHKSFGTKFKVPTIGGRPLDLYRLFVEVTSRGGIEKVIVERKWKDVIVGFKFRETITSASFMVRRYYLSLLYHFEQAYYFRKQVPPSSTPDPANRSLVDSFTPFGEGTALNGLHVQD 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00029 176 MobiDBLite consensus disorder prediction 1 35 - -
Aip09g00029 176 Pfam ARID/BRIGHT DNA binding domain 51 134 IPR001606 GO:0003677
Aip09g00029 176 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 22 157 - -
Aip09g00029 176 CDD ARID_HMGB9-like 49 134 IPR045303 GO:0003677
Aip09g00029 176 ProSiteProfiles ARID domain profile. 47 138 IPR001606 GO:0003677
Aip09g00029 176 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 22 157 - -
Aip09g00029 176 SMART bright_3 48 139 IPR001606 GO:0003677
Aip09g00029 176 Gene3D - 40 150 IPR036431 GO:0003677
Aip09g00029 176 SMART ARID_2 44 134 - -
Aip09g00029 176 SUPERFAMILY ARID-like 46 148 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00029 Aip-Chr9 273992 281197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00029 9 158 ARID Transcription Factor Family AT3G13350 48.000 8.63e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aip09g00029 ARID 2.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00029 - - adu:107491521 335.109