Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00027 ATGTCGATGGTGCTGAGGAGGGTGTGGGAACTGGTGTCAAGCACGTCGAGAGGGAAAGTGGATGGGAGCGGAGCAGAGGCGTGTTCACGATCCGATCTGGGAGAGTTGGAGCAGCTGCCGGGAGACATATTGTTGCAAATCCTGAGGGTGTTGGGGCCCAAGGATGCAGCCAAAATGAGCTGCGTATGCAAGGCTCTCAGATGCCTCGTTTTCGACAATCGTTTGTGGGTTCACTTCCTTCAGACCTATCAGCCCGACCCTTCTTCCGACTCTCTTTTCTTTGCTGAGGCCACCTTGAGCTATGGCTACCCTCTCCCTCTTCCACCCTTCCATGCCCGCACCCCCCAGCTCTCCTTCAAGCATATTTATGGCCAACGAGCTCGCGTTCCTGGTTCCGTTATCATTGATGGCGGTTCTGGCTATTGCAAATTCGGTTGGAGCAAATATGCCTCTCCATCCGGCCGTTCAGCAACGTTTTTGGAATTCGGTAACATCGAGTCTCCAATGTATACTAGACTACGACATTTTTTTGCAACTATATATAACAGGTATACACATTCTGATCATCAATTGCGCATGTGTACGCCAGCAGTTAAGGGCACGGGGCTATTCTTTTGCAATCATTGCTTAATCTTGGGGCTAGAGAAATATTGTTACTTTGGTTTCATTTGTTATATATTGCTTTCTTTCTCTGCACTCTGCAGGATGCAGGTGAAACCAAATACACAACCTGTTATTGTTTCCGTGCCAATATGTCATTATGATGATACTGAATCAGCTAAAGCATCAAGACGGCAGCTTAAAGAAGCAATCTATTCTGCCCTGTTTGACATGAATGTTCCCGCTGTTTGTGCTGTCAACCAGGCAACTCTAGCTCTGTTTGCTGCAAAACGTACTTCTGGAATAGCTGTTAATATAGGGTTTCAAGTCACATCTGTAGTTCCAATTTTTAATGGTAAAGTGATGCGCAGTGTGGGCGTGGAAGTTGTGGGACTGGGAGCACTAAAACTTACAGGATTTCTGAGGGAGAAGATGCAACTCAACAACCTAAATTTTCAGTCTTTATACACTGTCCGCACATTGAAAGAGAAGCTGTGCTATGTTGCTCTTGATTATGAAGCTGAGCTATCAAAAGATGAGATCTTATTCCAGCCTCATCTTGCTGGAGTGCAAGCAATGGGTTTGCACCAGGCCATAGCTCTTTGCATGGAGCATTGCCATTCTGCGGAATTAGCAGGTGACAGTGATTGGTACAAGACTGTAGTTTTATCAGGGGGTTCTGCATGCTTACCAGGTTTGGCAGAAAGGTTAGAGAAGGAACTAAAGGCCTTACTTCCTCCCTACATATCCAATGGAACCAGAGTCATACCTCCTCCATATGGTGCCGATACTCCTTGGTTTGGAGCAAAGATCATTGGCAATCTGAGCACATTTCCTGGTCCATGGTGTGTGACCAAGAAACAGTTCCGACAGAAGCCGAGACTCAACCTCATTTGGTGA 1500 0.4653 MSMVLRRVWELVSSTSRGKVDGSGAEACSRSDLGELEQLPGDILLQILRVLGPKDAAKMSCVCKALRCLVFDNRLWVHFLQTYQPDPSSDSLFFAEATLSYGYPLPLPPFHARTPQLSFKHIYGQRARVPGSVIIDGGSGYCKFGWSKYASPSGRSATFLEFGNIESPMYTRLRHFFATIYNRYTHSDHQLRMCTPAVKGTGLFFCNHCLILGLEKYCYFGFICYILLSFSALCRMQVKPNTQPVIVSVPICHYDDTESAKASRRQLKEAIYSALFDMNVPAVCAVNQATLALFAAKRTSGIAVNIGFQVTSVVPIFNGKVMRSVGVEVVGLGALKLTGFLREKMQLNNLNFQSLYTVRTLKEKLCYVALDYEAELSKDEILFQPHLAGVQAMGLHQAIALCMEHCHSAELAGDSDWYKTVVLSGGSACLPGLAERLEKELKALLPPYISNGTRVIPPPYGADTPWFGAKIIGNLSTFPGPWCVTKKQFRQKPRLNLIW 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00027 499 Pfam F-box-like 37 78 IPR001810 GO:0005515
Aip09g00027 499 PANTHER MACRONUCLEAR ACTIN 380 496 - -
Aip09g00027 499 PANTHER MACRONUCLEAR ACTIN 234 378 - -
Aip09g00027 499 PANTHER MACRONUCLEAR ACTIN 85 184 - -
Aip09g00027 499 Pfam Actin 258 374 IPR004000 -
Aip09g00027 499 Pfam Actin 380 489 IPR004000 -
Aip09g00027 499 SUPERFAMILY Actin-like ATPase domain 298 490 IPR043129 -
Aip09g00027 499 Gene3D - 393 464 - -
Aip09g00027 499 Gene3D Actin; Chain A, domain 4 332 378 - -
Aip09g00027 499 SUPERFAMILY Actin-like ATPase domain 132 304 IPR043129 -
Aip09g00027 499 SMART actin_3 130 489 IPR004000 -
Aip09g00027 499 CDD NBD_sugar-kinase_HSP70_actin 237 335 - -
Aip09g00027 499 Gene3D - 25 129 - -
Aip09g00027 499 SUPERFAMILY F-box domain 27 126 IPR036047 GO:0005515
Aip09g00027 499 SMART fbox_2 39 79 IPR001810 GO:0005515
Aip09g00027 499 ProSiteProfiles F-box domain profile. 33 79 IPR001810 GO:0005515
Aip09g00027 499 Gene3D - 289 331 - -
Aip09g00027 499 Gene3D - 465 491 - -
Aip09g00027 499 Gene3D - 235 288 - -
Aip09g00027 499 Gene3D Actin; Chain A, domain 4 380 392 - -
Aip09g00027 499 PANTHER ACTIN 380 496 IPR004000 -
Aip09g00027 499 PANTHER ACTIN 85 184 IPR004000 -
Aip09g00027 499 PANTHER ACTIN 234 378 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00027 Aip-Chr9 266719 270552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00027 235 491 Cytoskeleton Gene Families AT5G09810 30.450 1.03e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00027 K16616 - gmx:100791973 695.271