Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00020 ATGGTTTTCGTTGCTTCAACTTCGATCTTCATTGGAAGAACACATAAAGCTAGTCTTCACCCAAGTTTCTCTGTTGATGCACTTGCCAATTTTACCCGTTTAGCTTCCTTCAATGCTTCAGGTTTTGTGCTTAATGGTTCTATTCCTGAGTGGTTTGGTGACAAAAGCAATAACAACTACCTTGGTGCACTCCAGGTGCTTGATTTAAGTTCTTGCTCAATAACTGGCTCTATTCCTGAGTCAATTGGTGGTTTGATTTTGTTGAAGTCTGTGTTACTTTCTGGGAATAGCTTAACTGGTAGAATGCCTTCAGGTTTGGGAATATTGTCTAATTTAATTGTGCTTGATCTCTCAGAAAATGAACTTTCTGGGTCTATTATTGATTCATTGTTTTCACTTGGTAACCTCACAAGTCTTAATCTTTCTTCCAATTACTTATCTGGGAATGTTCCGAATCAACTTAGTAACCTTTCAGGGCTTGAAACTTTGGACCTTTCCAACAATGCACTAACTGGTAATGTGCCTAGTGTCTTGTTTTCTCGCCTTTCGAAACTTCGAGTTCTCAATTTAAGTGGTAACTTTATTGATGGTGATCTTCCTGATACTTTGTGGTCATTACCGAGCTTGCGTTTCGTTGATGTGTCCAACAACAACCTTACCGGTCCTCTACCGAAATTTTTCGGTTCAAATACTAGTTCTACTGATGCCACATTCAAGAGAGAATCATATGTTGTGGAGTTGGAATTATTAAGCAAGGTTTCACATGCAAGATTGATCCCAATCTTGGGACATTGCTTGGAGAATGACAATGAGAAATGTATAGTTTACAAGTATATGCCAAATGGAGATTTGGCAAGTTCTTTGCAGAGAGTCACCGATGCAGATGGTAAATCGAAGTCCCTTGATTGGATCACGAGATTGAAAATCGCTACGGGAGCTGCCAAAGGCCTTGCTTATCTACATGATTGCAGCCATCCCCTCGCTCACAGAGATGTTCAAGCTAGCAGCATACTTCTTGATGATAAATTTGAGGTGCGACTTGGAAGTTTGAGTGAGGTTACCACCCAAGGAGATGTCCATCCTGGTGTCATGAACAGGCTGTTCATCAAGCCATCATCTTCTAATCAACCAAATTTTGGGGGTAAGCTTCTGTTCGAGATGAATCGGATTCTAAGACCCAGTGGATACTTTATTATGTTGACTAAACATGACAGCATTGAAGAAGAAAAAGCCATGACTTCATTGACAGCATCTATTTGTTGGAATGTTCTGCCACATAAAAGTGACGACATTGCATTCCAATTGGAATTGAACAACATGGGGCAGAGTGGCCCGAGCAATGGCCGAAGAGGCTTGAATTATATACTGACCAAAGAGAAATTGGTTGCTGACATGAACCACTGGTATGCTGTTGTTAACAGGTCCTATCTCAATGGATTGGGCATTAACTGGTCGAGCATCCGAAATGTAATGGACATGAAAACCATCTATGGAGGGTACGCCTGTGAAACAACTCGAGGAGACAAGAACAATGATGAGAGTGCCTTTGGCACAAAACCAGAAGATGCGGTTCAACTCTCTGCTACTTCAAATGGAAGGGTTGCAGATCAAGTTTGA 1617 0.4113 MVFVASTSIFIGRTHKASLHPSFSVDALANFTRLASFNASGFVLNGSIPEWFGDKSNNNYLGALQVLDLSSCSITGSIPESIGGLILLKSVLLSGNSLTGRMPSGLGILSNLIVLDLSENELSGSIIDSLFSLGNLTSLNLSSNYLSGNVPNQLSNLSGLETLDLSNNALTGNVPSVLFSRLSKLRVLNLSGNFIDGDLPDTLWSLPSLRFVDVSNNNLTGPLPKFFGSNTSSTDATFKRESYVVELELLSKVSHARLIPILGHCLENDNEKCIVYKYMPNGDLASSLQRVTDADGKSKSLDWITRLKIATGAAKGLAYLHDCSHPLAHRDVQASSILLDDKFEVRLGSLSEVTTQGDVHPGVMNRLFIKPSSSNQPNFGGKLLFEMNRILRPSGYFIMLTKHDSIEEEKAMTSLTASICWNVLPHKSDDIAFQLELNNMGQSGPSNGRRGLNYILTKEKLVADMNHWYAVVNRSYLNGLGINWSSIRNVMDMKTIYGGYACETTRGDKNNDESAFGTKPEDAVQLSATSNGRVADQV 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00020 538 SMART tyrkin_6 231 435 IPR020635 GO:0004713|GO:0006468
Aip09g00020 538 Gene3D Ribonuclease Inhibitor 126 233 IPR032675 -
Aip09g00020 538 ProSiteProfiles Protein kinase domain profile. 163 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g00020 538 Pfam Protein tyrosine and serine/threonine kinase 239 348 IPR001245 GO:0004672|GO:0006468
Aip09g00020 538 Gene3D Transferase(Phosphotransferase) domain 1 234 358 - -
Aip09g00020 538 SUPERFAMILY Protein kinase-like (PK-like) 240 348 IPR011009 -
Aip09g00020 538 PANTHER BNAA07G03560D PROTEIN 236 376 - -
Aip09g00020 538 PANTHER BNAA07G03560D PROTEIN 14 228 - -
Aip09g00020 538 SUPERFAMILY L domain-like 26 231 - -
Aip09g00020 538 PANTHER RECEPTOR-LIKE PROTEIN 55 236 376 - -
Aip09g00020 538 PANTHER RECEPTOR-LIKE PROTEIN 55 14 228 - -
Aip09g00020 538 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 379 439 IPR004159 GO:0008168
Aip09g00020 538 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 455 502 IPR004159 GO:0008168
Aip09g00020 538 PRINTS Leucine-rich repeat signature 112 125 - -
Aip09g00020 538 PRINTS Leucine-rich repeat signature 157 170 - -
Aip09g00020 538 Pfam Leucine Rich Repeat 64 85 IPR001611 GO:0005515
Aip09g00020 538 Gene3D Ribonuclease Inhibitor 13 125 IPR032675 -
Aip09g00020 538 MobiDBLite consensus disorder prediction 511 538 - -
Aip09g00020 538 MobiDBLite consensus disorder prediction 523 538 - -
Aip09g00020 538 SMART LRR_typ_2 157 181 IPR003591 -
Aip09g00020 538 SMART LRR_typ_2 133 156 IPR003591 -
Aip09g00020 538 SMART LRR_typ_2 206 229 IPR003591 -
Aip09g00020 538 SMART LRR_typ_2 109 132 IPR003591 -
Aip09g00020 538 SMART LRR_typ_2 182 205 IPR003591 -
Aip09g00020 538 SMART LRR_typ_2 61 85 IPR003591 -
Aip09g00020 538 Pfam Leucine rich repeat 159 219 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00020 Aip-Chr9 201948 204666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00020 239 371 Miscellaneous Gene Families AT2G16250 65.185 1.08e-48 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Aip09g00020 PK_Tyr_Ser-Thr 4e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00020 - - aip:107641591 701.434