Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00004 ATGGGGAGGGGAAAGATCGAAATAAAAAGGATCGAGAACACAACGAATAGGCAGGTGACGTTCTGCAAGCGAAGAAATGGACTTCTGAAGAAAGCATATGAGCTATCAGTGCTGTGTGATGCAGAAGTCGCCCTAATTGTCTTCTCCAGTCGTGGCAGACTCTACGAATACTCCAACAACAATATAAGGTCAACTATTGAGAGATACAAAAAGGCATGCTCGGATCATTCATGCACCAGCACTGCCACCGAAATTAACGCTCAGTATTATCAACAAGAATCTGCAAAGTTGCGACAACAAATACAGATGCTGCAAAATTCTAACAGGCACCTGATGGGTGATGCATTGAGCACACTTACCGTGAAGGAACTTAAGCAGTTGGAGAACAGACTTGAAAGAGGAATCACTAGAATCAGGTCTAAGAAGCATGAGATGCTGCTGGCAGAAATTGAATACTTTCAGAAAAGGGAGATTGAATTGGAAAATGAAAATCTTTGCCTTCGGACTAAGATAACTGATGTTGAGAGAATTCAGCAAGCAAACATGGTTTCTGGACCTGAGCTGAATGCGATTCAGGCGTTAGCTTCTCGTAATTTCTTCAATCAAAGCATGATTGATCAGACCGCCGGAACTGCTTACCCTCAGTCATCAGACAAGAAGATTCTTCATCTCGGCTAG 678 0.4292 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIERYKKACSDHSCTSTATEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTKITDVERIQQANMVSGPELNAIQALASRNFFNQSMIDQTAGTAYPQSSDKKILHLG 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00004 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip09g00004 225 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 2 212 - -
Aip09g00004 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aip09g00004 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip09g00004 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 212 - -
Aip09g00004 225 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Aip09g00004 225 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Aip09g00004 225 Coils Coil 87 107 - -
Aip09g00004 225 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip09g00004 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip09g00004 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip09g00004 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip09g00004 225 Coils Coil 124 144 - -
Aip09g00004 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aip09g00004 225 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip09g00004 225 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00004 Aip-Chr9 59442 83036 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00004 1 225 MADS-box Gene Family AT4G09960 75.217 8.95e-122 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aip09g00004 K-box 8.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00004 K09264 - gmx:100301905 406.757