Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03380 ATGGCCAACAGCCAAACACGCCCTAACTCCACCACCGTAGATCCAAACAGTGGTTTCAACCCACATTCCAGAACCTTCCACAGCCTCCGCCCTAACGTCCCCCTCCCTCCGCCCTCTCAGCCTCTCTCAATCACCGAATACGCACTCTCTCTCATCCCCTCCGCCGCCACCTCCACCGACGGCGCAACTACTGCTCTCATCGACGCCGCCGCGGACATCCGCCTCTCCTACCCTCTCCTCCTCCGCCGCATAAAATCCCTCTCAATCTCCCTCCAATCCTTCACACCACTCAAAAAAGGACACGTGGCACTCATACTCACCCCTCCTTCCGTACACGTTCCCGTTCTCTATTTTTCCCTCTTATCCCTCGGAATCGTTATTTCTCCCGCCAACCCTCTCAGCTCCCCGGCCGAGTTAACTCACCTCATCCAACTCGTGAACCCTGAAATCGCCTTCACAACTTCCAAAACTGCCGCTAAAATCCCCAAACTACCCCTCGGCCCCATCCTCCTCGACTCGCCGGAGTTCCTCTCCATGCTCGAGAACAACGAGTCAGTAACTAGCGAACTCGAACGAGTCGAGGTGAGTCAGTCAGAGCCAGCAGCGATTCTCTTCTCTTCCGGAACCACGGGAAGAGTGAAAGGGGTTCTCCTCACACACGGGAACCTCATCGCTCTAATTGGAGGGTTCTGCCACCTGAAACACATGACGGAGGCGCCAGAAGAGTCACCGGAGGAGGAGAACTGGGTGGCACTGGTGACGGTGCCGTTGTTCCACGTGTTCGGGTTCTTCATGCTGATAAGAGGCTTAGCGATGGGTGAAACGATGGTTCTAATGGAGAGGTTCGATTTCGAAGGGATGCTGAGGGCGGTGGAGAAATACAAGGTGAATTACATGCCAGTGTCGCCGCCGCTGGTGGTGGCGCTGACGAAGTCGGAGGTGGCAAGAAAGTATGATCTGAGTTCGTTGCGGTTGTTAGGGTCCGGTGGAGCTCCGCTGGGAAAAGAGGTGGCGGAGAGTTTCGGTGCTAAGTTCCCCAACGTGGAAATTGTGGAGGGGTATGGTCTAACTGAAAGTTCAGGAGGAGCAGCAAGGATGATAGGAACTGATGAGGCGAAACGACATGGTTCTGTTGGTCGATTAGCTGAGCAAATGGAGGCTAAGATAGTTGATCCTATCACCGGCGAATCGTTGCCTCCAGGCCGCCGAGGAGAGCTATGGTTGCGTGGACCAACAATCATGAAAGGTTATGTGGGAGATGAAGATGCCACTGCTCAAACATTAGATTCAGAGGGATGGTTGAAGACTGGTGATCTTTGTTATTTTGATTCTGATGGTTATCTCTACATTGTGGATAGACTCAAGGAATTGATCAAATACAAAGCTTATCAGGTTCCCCCTGCTGAATTGGAAAATATACTTCATAACAATCCTGAAATTGCTGATGCTGCTGTAGTACCGTATCCTGATGAAGAAGCAGGGCAAATTCCAATGGCATTTGTTGTAAGAAAGCCAGGAAGCAGCATCAATGCAGCTGAGGTCATGGAGTTTGTGGCAAAGCAGGTTTCACCATACAAGAAGATACGGCGTGTTTCTTTTATTAACTCTATACCAAAATCTCCGGCTGGTAAAATTTTGAGAAGACAATTGGTTGATCTTGCTCTAACAAGTGGTTCTTCCAAGTTGTGA 1689 0.5121 MANSQTRPNSTTVDPNSGFNPHSRTFHSLRPNVPLPPPSQPLSITEYALSLIPSAATSTDGATTALIDAAADIRLSYPLLLRRIKSLSISLQSFTPLKKGHVALILTPPSVHVPVLYFSLLSLGIVISPANPLSSPAELTHLIQLVNPEIAFTTSKTAAKIPKLPLGPILLDSPEFLSMLENNESVTSELERVEVSQSEPAAILFSSGTTGRVKGVLLTHGNLIALIGGFCHLKHMTEAPEESPEEENWVALVTVPLFHVFGFFMLIRGLAMGETMVLMERFDFEGMLRAVEKYKVNYMPVSPPLVVALTKSEVARKYDLSSLRLLGSGGAPLGKEVAESFGAKFPNVEIVEGYGLTESSGGAARMIGTDEAKRHGSVGRLAEQMEAKIVDPITGESLPPGRRGELWLRGPTIMKGYVGDEDATAQTLDSEGWLKTGDLCYFDSDGYLYIVDRLKELIKYKAYQVPPAELENILHNNPEIADAAVVPYPDEEAGQIPMAFVVRKPGSSINAAEVMEFVAKQVSPYKKIRRVSFINSIPKSPAGKILRRQLVDLALTSGSSKL 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03380 562 Gene3D - 456 556 IPR045851 -
Aip08g03380 562 Pfam AMP-binding enzyme 62 460 IPR000873 -
Aip08g03380 562 Gene3D - 39 455 IPR042099 -
Aip08g03380 562 SUPERFAMILY Acetyl-CoA synthetase-like 59 555 - -
Aip08g03380 562 MobiDBLite consensus disorder prediction 1 32 - -
Aip08g03380 562 MobiDBLite consensus disorder prediction 1 27 - -
Aip08g03380 562 ProSitePatterns Putative AMP-binding domain signature. 203 214 IPR020845 -
Aip08g03380 562 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 26 551 - -
Aip08g03380 562 CDD 4CL 49 550 - -
Aip08g03380 562 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 26 551 - -
Aip08g03380 562 Pfam AMP-binding enzyme C-terminal domain 469 544 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03380 Aip-Chr8 125039769 125045169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03380 9 562 Monolignol Biosynthesis Gene Families AT5G63380 59.253 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03380 K01904 - gmx:100804044 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03380 08 125039769 125045169 Aip08g03380 08 125039769 125045169 ECH