Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03373 ATGACAGGAGGTGAACCACAACCAAAGCAAGATGAGCAGCCACATCTAGTTAAAGATCAGTTACCACATGTTTCTTACTGCATTACAAGTCCTCCTCCATGGCGTCTCCACACATCTGGTCATGCTTATCGTGGGGAATTGGAGGAAGTACTTCGAATTGTGAAGCCGCAACATTTTCTTCCCATACATGGAGAACTCTTGTTTTTGAAGGAGCATGAATTACTTGGAAAATCAAATGGCATTCGGCACACTGCTGTTATTAAAAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGGAGAGTCCTTTCTAATGGTTTCATTTCCCTTGGAAGAGAGAATTTACAGTTGAAGTACAGTGATGGTGACAAAGCATTTGGTACATCAAGCGACCTCTTCATTGATGAAAGATTGAAAATTGCATTAGATGGCATCATCGTGGTTAGCATGGAAGTTTTTCGCCCCCAAAGAGCAGACAGTTTGGCTGAAAACACCTTAAAAGGGAAGATAAGGATTACGACAAGATGCCTATGGCTTGACAAGGGAAAGTTATTGGATGCACTGCATAAAGCTGCTCATGCTGCTCTTTCAAGCTGCCCTGTAAAGTGTCCACTGGCTCACATGGAAAGAACAGTGGCCGAGGTCTTGAGGAAGATGGTGAGGAAGTACAGTGGTAAACGGCCTGAAGTTATTGCTATTGCCATAGAAAATCCAGCTGCTGTTCTTGCTGAGGAGATAAACACAAAGTTATCTGGCAAGTCACATGTGGATCATGGAACATCAACATTAAGAAAAATAGTCGATGGGCACAGGAAGGAAAATCAGCCAGACACAACGCAAATAAGAGTTAATGCAGACGATGTCAATGATGTTGAAGGACTTCTACCTGAGGAAGACACTGGTCCACCAACCGAAGAAGCCGAGGGTGATTTATCGGATTCAGAGGAATTTTGGAAGCCATTTATTGCATCCTCACCGGTTGAGAAGTCAATCAAAGCTAACAACGGTTATGTTCCACGAAAGGAGCACAAGTCTAATCTTAAGAAAGATGATTCCGAAGACATTAGTGAAGCCAACTTTGTGAAAGCATCCAGTTCTGAACTCAAGTCGTCGAAGTCAGGGAAGAGGAATAAATGGAAACCTGAAGAAATTAAGAAGTTGATCGACATGCGCGGGAAACTGCACGATAGATTTCAAATTGTGAAGGGAAGGATGGCTTTATGGGAAGAGATATCTCAGAGCTTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAGTGTAAATCGCTTTGGACATCTTTGGTACAGAAATATCAGGAGATTAAGAACGAGAAGGGTAGTAGCAAGAGTAGTTGGCAATATCTTGAGGACATGGAAAAGATAATGCCTGATAGTAAAGCAATGGCAACAAAATGA 1419 0.4249 MTGGEPQPKQDEQPHLVKDQLPHVSYCITSPPPWRLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSNGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGRENLQLKYSDGDKAFGTSSDLFIDERLKIALDGIIVVSMEVFRPQRADSLAENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVKCPLAHMERTVAEVLRKMVRKYSGKRPEVIAIAIENPAAVLAEEINTKLSGKSHVDHGTSTLRKIVDGHRKENQPDTTQIRVNADDVNDVEGLLPEEDTGPPTEEAEGDLSDSEEFWKPFIASSPVEKSIKANNGYVPRKEHKSNLKKDDSEDISEANFVKASSSELKSSKSGKRNKWKPEEIKKLIDMRGKLHDRFQIVKGRMALWEEISQSLLADGISRSPGQCKSLWTSLVQKYQEIKNEKGSSKSSWQYLEDMEKIMPDSKAMATK 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03373 472 Gene3D - 31 95 IPR036866 -
Aip08g03373 472 ProSiteProfiles Myb-like domain profile. 372 436 IPR001005 -
Aip08g03373 472 Gene3D - 8 30 IPR042173 -
Aip08g03373 472 Gene3D - 131 237 - -
Aip08g03373 472 MobiDBLite consensus disorder prediction 266 314 - -
Aip08g03373 472 Gene3D - 380 441 - -
Aip08g03373 472 MobiDBLite consensus disorder prediction 334 355 - -
Aip08g03373 472 Pfam Myb/SANT-like DNA-binding domain 377 462 IPR044822 -
Aip08g03373 472 MobiDBLite consensus disorder prediction 336 355 - -
Aip08g03373 472 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 37 72 IPR011108 -
Aip08g03373 472 PANTHER RIBONUCLEASE J 36 472 - -
Aip08g03373 472 CDD GT1 378 443 - -
Aip08g03373 472 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 36 472 - -
Aip08g03373 472 MobiDBLite consensus disorder prediction 292 313 - -
Aip08g03373 472 SUPERFAMILY Metallo-hydrolase/oxidoreductase 32 93 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03373 Aip-Chr8 124993675 124997034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03373 3 34 Organic Solute Cotransporters AT5G62890 75.758 3.35e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Aip08g03373 Myb_DNA-bind_4 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03373 - - gmx:100814619 637.106