Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03354 ATGGAGAACACCACCAACACCAACAACAACCACCCTCACCAGCAGGCCCAATCGAGCCCATACCCAGGCCCACCAACACTCCCACCACCTCCCACCACCACCACCGTCGTCCCCGGAGGCGCACCACCACCGTCCTCCGCCGCACCATTCCACCACCTCCTCCAGCAACAACAGCAACAGCTTCAGATGTTCTGGTCTTACCAGCGCCAAGAAATCGAACACGTCAACGACTTTAAGAACCACCAGCTTCCATTGGCGCGCATCAAGAAGATCATGAAGGCCGACGAAGACGTTCGCATGATCTCCGCCGAAGCCCCAATCCTCTTCGCCAAAGCCTGCGAGCTCTTCATCCTCGAGCTCACGATCCGTTCATGGCTTCACGCCGAAGAGAACAAGCGAAGGACACTTCAGAAGAACGACATCGCCGCCGCCATTACGCGAACCGACATCTTCGATTTCTTAGTTGATATTGTTCCCAGGGACGATATCAAGGACGATGCGGCGGCGCTCGGCGGAATTACTGCTGCGGAGGATGGCAACTATGGGAGTGGCGCCACCGCCGCTCAAGGGAATCTTGATGGACAGAGCTGA 591 0.5719 MENTTNTNNNHPHQQAQSSPYPGPPTLPPPPTTTTVVPGGAPPPSSAAPFHHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDDIKDDAAALGGITAAEDGNYGSGATAAQGNLDGQS 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03354 196 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 9 175 - -
Aip08g03354 196 MobiDBLite consensus disorder prediction 18 45 - -
Aip08g03354 196 Gene3D Histone, subunit A 49 160 IPR009072 GO:0046982
Aip08g03354 196 SUPERFAMILY Histone-fold 41 154 IPR009072 GO:0046982
Aip08g03354 196 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 175 - -
Aip08g03354 196 MobiDBLite consensus disorder prediction 1 17 - -
Aip08g03354 196 MobiDBLite consensus disorder prediction 1 49 - -
Aip08g03354 196 Pfam Core histone H2A/H2B/H3/H4 68 145 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03354 Aip-Chr8 124814374 124818013 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03354 26 172 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.380 2.55e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Aip08g03354 CBFD_NFYB_HMF 1.7e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03354 - - qsu:112006434 234.572